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PyDISH No: 16273

PDB: 7y5e,
chainID: V6, resSeq: 201
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.3 Å

axial ligand #1: HIS

chainID: V6,
resSeq: 41,
Coordination distance[Å]: 2.994
molecule: Cytochrome c550
Organism: Porphyridium purpureum

axial ligand #2: HIS

chainID: V6,
resSeq: 92,
Coordination distance[Å]: 2.807
molecule: same as ligand #1

List of other hemes in pdb:7y5e

ID of heme	Distortion	Axial ligands on heme		Function & structure
7y5e-FL-102	`sad. +0.88 ruf. -0.31 dom. -0.70 bre. +0.23`	HIS	chainID: FL, resSeq: 24, molecule: Cytochrome b559 subunit beta	electron transporter oligomeric count: 894 pocket vol.: 542.0 Å³ d(Fe-oop): 0.024 Å
7y5e-FL-102	`sad. +0.88 ruf. -0.31 dom. -0.70 bre. +0.23`	Not assigned.
7y5e-VL-201	`sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12`	HIS	chainID: VL, resSeq: 41, molecule: Cytochrome c550	electron transporter oligomeric count: 894 pocket vol.: 476.0 Å³ d(Fe-oop): 0.041 Å
7y5e-VL-201	`sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12`	HIS	chainID: VL, resSeq: 92, molecule: Cytochrome c550
7y5e-GN-201	`sad. +0.53 ruf. -0.64 dom. -0.10 bre. -0.17`	HIS	chainID: GN, resSeq: 43, molecule: Cytochrome c6	electron transporter oligomeric count: 894 pocket vol.: 366.0 Å³ d(Fe-oop): 0.010 Å
7y5e-GN-201	`sad. +0.53 ruf. -0.64 dom. -0.10 bre. -0.17`	MET	chainID: GN, resSeq: 83, molecule: Cytochrome c6
7y5e-G2-201	`sad. +0.53 ruf. -0.64 dom. -0.10 bre. -0.17`	HIS	chainID: G2, resSeq: 43, molecule: Cytochrome c6	electron transporter oligomeric count: 894 pocket vol.: 368.0 Å³ d(Fe-oop): 0.010 Å
7y5e-G2-201	`sad. +0.53 ruf. -0.64 dom. -0.10 bre. -0.17`	MET	chainID: G2, resSeq: 83, molecule: Cytochrome c6
7y5e-E6-101	`sad. +0.20 ruf. -0.06 dom. -0.11 bre. -0.03`	Not assigned.		unclassified oligomeric count: 894 pocket vol.: 583.0 Å³ d(Fe-oop): 0.057 Å
7y5e-E6-101	`sad. +0.20 ruf. -0.06 dom. -0.11 bre. -0.03`	Not assigned.
7y5e-f6-101	`sad. +0.26 ruf. -0.04 dom. -0.35 bre. -0.03`	HIS	chainID: e6, resSeq: 23, molecule: Cytochrome b559 subunit alpha	electron transporter oligomeric count: 894 pocket vol.: 458.0 Å³ d(Fe-oop): 0.004 Å
7y5e-f6-101	`sad. +0.26 ruf. -0.04 dom. -0.35 bre. -0.03`	Not assigned.
7y5e-v6-201	`sad. -0.01 ruf. -0.78 dom. +0.10 bre. +0.11`	HIS	chainID: v6, resSeq: 41, molecule: Cytochrome c550	electron transporter oligomeric count: 894 pocket vol.: 462.0 Å³ d(Fe-oop): 0.026 Å
7y5e-v6-201	`sad. -0.01 ruf. -0.78 dom. +0.10 bre. +0.11`	HIS	chainID: v6, resSeq: 92, molecule: Cytochrome c550
7y5e-fL-102	`sad. +0.71 ruf. -0.03 dom. -0.53 bre. +0.14`	HIS	chainID: eL, resSeq: 23, molecule: Cytochrome b559 subunit alpha	electron transporter oligomeric count: 894 pocket vol.: 468.0 Å³ d(Fe-oop): 0.025 Å
7y5e-fL-102	`sad. +0.71 ruf. -0.03 dom. -0.53 bre. +0.14`	HIS	chainID: fL, resSeq: 24, molecule: Cytochrome b559 subunit beta
7y5e-vL-201	`sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12`	HIS	chainID: vL, resSeq: 41, molecule: Cytochrome c550	electron transporter oligomeric count: 894 pocket vol.: 509.0 Å³ d(Fe-oop): 0.042 Å
7y5e-vL-201	`sad. +0.08 ruf. -0.41 dom. +0.12 bre. +0.12`	HIS	chainID: vL, resSeq: 92, molecule: Cytochrome c550