Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 16128

PDB: 7vld,
chainID: C, resSeq: 200
heme type: B

distortion

Protein data

function: oxygen carrier
experiment: X-RAY DIFFRACTION
resolution: 2.1 Å
origomeric count: 24

axial ligand #1: HIS

chainID: C,
resSeq: 99,
Coordination distance[Å]: 2.061
molecule: Extracellular B2 globin
Organism: Lamellibrachia satsuma

axial ligand #2: OXY

chainID: C,
resSeq: 201,
Coordination distance[Å]: 1.797
molecule: OXYGEN MOLECULE

List of other hemes in pdb:7vld

ID of heme	Distortion	Axial ligands on heme		Function & structure
7vld-A-200	`sad. +0.26 ruf. +0.18 dom. -0.32 bre. -0.21`	HIS	chainID: A, resSeq: 94, molecule: Extracellular A1 globin	oxygen carrier oligomeric count: 24 pocket vol.: 542.0 Å³ d(Fe-oop): 0.206 Å
7vld-A-200	`sad. +0.26 ruf. +0.18 dom. -0.32 bre. -0.21`	OXY	chainID: A, resSeq: 201, molecule: OXYGEN MOLECULE
7vld-B-201	`sad. +0.11 ruf. -0.28 dom. -0.15 bre. -0.20`	HIS	chainID: B, resSeq: 95, molecule: Extracellular A2 globin	oxygen carrier oligomeric count: 24 pocket vol.: 537.0 Å³ d(Fe-oop): 0.046 Å
7vld-B-201	`sad. +0.11 ruf. -0.28 dom. -0.15 bre. -0.20`	OXY	chainID: B, resSeq: 202, molecule: OXYGEN MOLECULE
7vld-D-201	`sad. -0.01 ruf. +0.34 dom. -0.40 bre. -0.22`	HIS	chainID: D, resSeq: 99, molecule: Extracellular B1 globin	oxygen carrier oligomeric count: 24 pocket vol.: 536.0 Å³ d(Fe-oop): 0.152 Å
7vld-D-201	`sad. -0.01 ruf. +0.34 dom. -0.40 bre. -0.22`	OXY	chainID: D, resSeq: 202, molecule: OXYGEN MOLECULE
7vld-E-200	`sad. +0.18 ruf. +0.06 dom. -0.25 bre. -0.22`	HIS	chainID: E, resSeq: 94, molecule: Extracellular A1 globin	oxygen carrier oligomeric count: 24 pocket vol.: 530.0 Å³ d(Fe-oop): 0.172 Å
7vld-E-200	`sad. +0.18 ruf. +0.06 dom. -0.25 bre. -0.22`	OXY	chainID: E, resSeq: 201, molecule: OXYGEN MOLECULE
7vld-F-201	`sad. +0.07 ruf. -0.26 dom. -0.21 bre. -0.20`	HIS	chainID: F, resSeq: 95, molecule: Extracellular A2 globin	oxygen carrier oligomeric count: 24 pocket vol.: 515.0 Å³ d(Fe-oop): 0.025 Å
7vld-F-201	`sad. +0.07 ruf. -0.26 dom. -0.21 bre. -0.20`	OXY	chainID: F, resSeq: 202, molecule: OXYGEN MOLECULE
7vld-G-200	`sad. -0.04 ruf. +0.16 dom. -0.13 bre. -0.23`	HIS	chainID: G, resSeq: 99, molecule: Extracellular B2 globin	oxygen carrier oligomeric count: 24 pocket vol.: 515.0 Å³ d(Fe-oop): 0.081 Å
7vld-G-200	`sad. -0.04 ruf. +0.16 dom. -0.13 bre. -0.23`	OXY	chainID: G, resSeq: 201, molecule: OXYGEN MOLECULE
7vld-H-201	`sad. +0.07 ruf. +0.27 dom. -0.29 bre. -0.22`	HIS	chainID: H, resSeq: 99, molecule: Extracellular B1 globin	oxygen carrier oligomeric count: 24 pocket vol.: 537.0 Å³ d(Fe-oop): 0.082 Å
7vld-H-201	`sad. +0.07 ruf. +0.27 dom. -0.29 bre. -0.22`	OXY	chainID: H, resSeq: 202, molecule: OXYGEN MOLECULE