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PyDISH No: 16105

PDB: 7vd5,
chainID: f, resSeq: 101
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.5 Å

axial ligand #1: HIS

chainID: e,
resSeq: 24,
Coordination distance[Å]: 2.044
molecule: Cytochrome b559 subunit alpha
Organism: Chaetoceros gracilis

axial ligand #2: HIS

chainID: f,
resSeq: 22,
Coordination distance[Å]: 2.02
molecule: Cytochrome b559 subunit beta
Organism: Chaetoceros gracilis

List of other hemes in pdb:7vd5

ID of heme Distortion Axial ligands on heme Function & structure
7vd5-F-101
 sad. +0.51
ruf. -0.56
dom. +0.20
bre. +0.03
 HIS chainID: E,
resSeq: 24,
molecule: Cytochrome b559 subunit alpha		 electron transporter
oligomeric count: 68
pocket vol.: 534.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: F, resSeq: 22,
molecule: Cytochrome b559 subunit beta
7vd5-V-201
 sad. +0.27
ruf. -0.56
dom. -0.02
bre. +0.01
 HIS chainID: V,
resSeq: 41,
molecule: Cytochrome c-550		 electron transporter
oligomeric count: 68
pocket vol.: 412.0 Å3
d(Fe-oop): 0.030 Å
HIS chainID: V, resSeq: 92,
molecule: Cytochrome c-550
7vd5-v-201
 sad. +0.27
ruf. -0.56
dom. -0.02
bre. +0.02
 HIS chainID: v,
resSeq: 41,
molecule: Cytochrome c-550		 electron transporter
oligomeric count: 68
pocket vol.: 417.0 Å3
d(Fe-oop): 0.030 Å
HIS chainID: v, resSeq: 92,
molecule: Cytochrome c-550