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PyDISH No: 15736

PDB: 7rh7,
chainID: O, resSeq: 302
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.0 Å

axial ligand #1: HIS

chainID: O,
resSeq: 192,
Coordination distance[Å]: 2.099
molecule: Cytochrome bc1 complex cytochrome c subunit
EC number: 7.1.1.8
Organism: Mycolicibacterium smegmatis MC2 155

axial ligand #2: MET

chainID: O,
resSeq: 229,
Coordination distance[Å]: 2.923
molecule: same as ligand #1

List of other hemes in pdb:7rh7

ID of heme Distortion Axial ligands on heme Function & structure
7rh7-R-602
sad. -0.01
ruf. +0.01
dom. +0.00
bre. -0.05
HIS chainID: R,
resSeq: 397,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 724.0 Å3
d(Fe-oop): 0.006 Å
Not assigned.
7rh7-R-603
sad. +0.00
ruf. +0.00
dom. +0.00
bre. -0.01
HIS chainID: R,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 619.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: R, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7rh7-O-301
sad. +0.17
ruf. -0.61
dom. +0.78
bre. -0.14
HIS chainID: O,
resSeq: 91,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 362.0 Å3
d(Fe-oop): 0.282 Å
Not assigned.
7rh7-E-601
sad. -1.36
ruf. -0.45
dom. +0.20
bre. +0.03
HIS chainID: E,
resSeq: 123,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 334.0 Å3
d(Fe-oop): 0.107 Å
HIS chainID: E, resSeq: 226,
molecule: Cytochrome bc1 complex cytochrome b subunit
7rh7-E-602
sad. -0.63
ruf. +0.16
dom. +0.21
bre. -0.12
HIS chainID: E,
resSeq: 109,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 361.0 Å3
d(Fe-oop): 0.163 Å
HIS chainID: E, resSeq: 211,
molecule: Cytochrome bc1 complex cytochrome b subunit
7rh7-L-602
sad. -0.01
ruf. +0.01
dom. +0.00
bre. -0.06
HIS chainID: L,
resSeq: 397,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 724.0 Å3
d(Fe-oop): 0.005 Å
Not assigned.
7rh7-L-603
sad. +0.00
ruf. -0.00
dom. +0.00
bre. -0.01
HIS chainID: L,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 633.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: L, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7rh7-I-301
sad. +0.14
ruf. -0.51
dom. +0.57
bre. -0.19
HIS chainID: I,
resSeq: 91,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 372.0 Å3
d(Fe-oop): 0.116 Å
Not assigned.
7rh7-I-302
sad. +0.24
ruf. -0.73
dom. +0.40
bre. -0.16
HIS chainID: I,
resSeq: 192,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 341.0 Å3
d(Fe-oop): 0.030 Å
MET chainID: I, resSeq: 229,
molecule: Cytochrome bc1 complex cytochrome c subunit
7rh7-F-601
sad. -1.23
ruf. -0.67
dom. +0.15
bre. +0.02
HIS chainID: F,
resSeq: 123,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 326.0 Å3
d(Fe-oop): 0.102 Å
HIS chainID: F, resSeq: 226,
molecule: Cytochrome bc1 complex cytochrome b subunit
7rh7-F-602
sad. -0.64
ruf. -0.01
dom. +0.18
bre. -0.10
HIS chainID: F,
resSeq: 109,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 327.0 Å3
d(Fe-oop): 0.189 Å
HIS chainID: F, resSeq: 211,
molecule: Cytochrome bc1 complex cytochrome b subunit