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PyDISH No: 15711

PDB: 7rh5,
chainID: E, resSeq: 601
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.0 Å

axial ligand #1: HIS

chainID: E,
resSeq: 123,
Coordination distance[Å]: 2.606
molecule: Cytochrome bc1 complex cytochrome b subunit
EC number: 7.1.1.8
Organism: Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)

axial ligand #2: HIS

chainID: E,
resSeq: 226,
Coordination distance[Å]: 2.045
molecule: same as ligand #1

List of other hemes in pdb:7rh5

ID of heme Distortion Axial ligands on heme Function & structure
7rh5-R-602
sad. -0.01
ruf. +0.00
dom. +0.00
bre. -0.07
HIS chainID: R,
resSeq: 397,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 716.0 Å3
d(Fe-oop): 0.005 Å
Not assigned.
7rh5-R-603
sad. -0.00
ruf. -0.00
dom. +0.01
bre. -0.03
HIS chainID: R,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 662.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: R, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7rh5-E-602
sad. -0.59
ruf. -0.06
dom. +0.14
bre. -0.11
HIS chainID: E,
resSeq: 109,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 339.0 Å3
d(Fe-oop): 0.157 Å
HIS chainID: E, resSeq: 211,
molecule: Cytochrome bc1 complex cytochrome b subunit
7rh5-F-702
sad. -1.15
ruf. -0.69
dom. +0.09
bre. +0.00
HIS chainID: F,
resSeq: 123,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 339.0 Å3
d(Fe-oop): 0.145 Å
HIS chainID: F, resSeq: 226,
molecule: Cytochrome bc1 complex cytochrome b subunit
7rh5-F-703
sad. -0.60
ruf. +0.04
dom. +0.20
bre. -0.13
HIS chainID: F,
resSeq: 109,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 24
pocket vol.: 367.0 Å3
d(Fe-oop): 0.134 Å
HIS chainID: F, resSeq: 211,
molecule: Cytochrome bc1 complex cytochrome b subunit
7rh5-L-602
sad. -0.01
ruf. +0.00
dom. +0.00
bre. -0.07
HIS chainID: L,
resSeq: 397,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 740.0 Å3
d(Fe-oop): 0.005 Å
Not assigned.
7rh5-L-603
sad. -0.00
ruf. -0.00
dom. +0.00
bre. -0.04
HIS chainID: L,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 24
pocket vol.: 643.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: L, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7rh5-O-301
sad. -0.11
ruf. -0.48
dom. +0.62
bre. -0.18
HIS chainID: O,
resSeq: 91,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 409.0 Å3
d(Fe-oop): 0.116 Å
MET chainID: O, resSeq: 122,
molecule: Cytochrome bc1 complex cytochrome c subunit
7rh5-O-302
sad. +0.48
ruf. -1.08
dom. +0.38
bre. -0.07
HIS chainID: O,
resSeq: 192,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 342.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: O, resSeq: 229,
molecule: Cytochrome bc1 complex cytochrome c subunit
7rh5-I-301
sad. -0.04
ruf. -0.67
dom. +0.59
bre. -0.18
HIS chainID: I,
resSeq: 91,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 414.0 Å3
d(Fe-oop): 0.014 Å
MET chainID: I, resSeq: 122,
molecule: Cytochrome bc1 complex cytochrome c subunit
7rh5-I-302
sad. +0.33
ruf. -0.89
dom. +0.44
bre. -0.14
HIS chainID: I,
resSeq: 192,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 24
pocket vol.: 362.0 Å3
d(Fe-oop): 0.095 Å
MET chainID: I, resSeq: 229,
molecule: Cytochrome bc1 complex cytochrome c subunit