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PyDISH No: 15591

PDB: 7qrm,
chainID: I, resSeq: 2002
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 2.7 Å

axial ligand #1: HIS

chainID: I,
resSeq: 86,
Coordination distance[Å]: 2.536
molecule: Cytochrome b6
Organism: Spinacia oleracea

axial ligand #2: HIS

chainID: I,
resSeq: 187,
Coordination distance[Å]: 2.519
molecule: same as ligand #1

List of other hemes in pdb:7qrm

ID of heme Distortion Axial ligands on heme Function & structure
7qrm-A-301
sad. -0.10
ruf. +0.09
dom. +0.06
bre. -0.22
HIS chainID: A,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 522.0 Å3
d(Fe-oop): 0.057 Å
HIS chainID: A, resSeq: 187,
molecule: Cytochrome b6
7qrm-A-302
sad. -0.83
ruf. -0.46
dom. +0.03
bre. -0.14
HIS chainID: A,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 500.0 Å3
d(Fe-oop): 0.046 Å
HIS chainID: A, resSeq: 202,
molecule: Cytochrome b6
7qrm-A-303
sad. +0.09
ruf. -0.31
dom. -0.36
bre. -0.62
Not assigned. unclassified
oligomeric count: 16
pocket vol.: 683.0 Å3
d(Fe-oop): 0.140 Å
Not assigned.
7qrm-C-301
sad. -0.68
ruf. -0.62
dom. +0.19
bre. -0.17
TYR chainID: C,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 16
pocket vol.: 465.0 Å3
d(Fe-oop): 0.038 Å
HIS chainID: C, resSeq: 25,
molecule: Cytochrome f
7qrm-I-2003
sad. -0.79
ruf. -0.47
dom. +0.02
bre. -0.14
HIS chainID: I,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 504.0 Å3
d(Fe-oop): 0.047 Å
HIS chainID: I, resSeq: 202,
molecule: Cytochrome b6
7qrm-I-2004
sad. +0.24
ruf. -0.02
dom. -0.18
bre. -0.29
Not assigned. unclassified
oligomeric count: 16
pocket vol.: 661.0 Å3
d(Fe-oop): 0.155 Å
Not assigned.
7qrm-K-301
sad. -0.34
ruf. -0.75
dom. +0.08
bre. -0.19
TYR chainID: K,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 16
pocket vol.: 454.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: K, resSeq: 25,
molecule: Cytochrome f