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PyDISH No: 15216

PDB: 7lq5,
chainID: B, resSeq: 308
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.4 Å
origomeric count: 3

axial ligand #1: HIS

chainID: B,
resSeq: 215,
Coordination distance[Å]: 2.068
molecule: Cytochrome c
Organism: Geobacter sulfurreducens PCA

axial ligand #2: HIS

chainID: B,
resSeq: 252,
Coordination distance[Å]: 2.112
molecule: same as ligand #1

List of other hemes in pdb:7lq5

ID of heme	Distortion	Axial ligands on heme		Function & structure
7lq5-A-301	`sad. -0.03 ruf. +0.01 dom. -0.03 bre. -0.10`	HIS	chainID: A, resSeq: 30, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 607.0 Å³ d(Fe-oop): 0.078 Å
7lq5-A-301	`sad. -0.03 ruf. +0.01 dom. -0.03 bre. -0.10`	HIS	chainID: A, resSeq: 96, molecule: Cytochrome c
7lq5-A-302	`sad. -0.01 ruf. +0.01 dom. -0.01 bre. -0.10`	HIS	chainID: A, resSeq: 41, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 399.0 Å³ d(Fe-oop): 0.028 Å
7lq5-A-302	`sad. -0.01 ruf. +0.01 dom. -0.01 bre. -0.10`	HIS	chainID: A, resSeq: 69, molecule: Cytochrome c
7lq5-A-303	`sad. -0.02 ruf. -0.02 dom. +0.01 bre. -0.10`	HIS	chainID: A, resSeq: 40, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 547.0 Å³ d(Fe-oop): 0.013 Å
7lq5-A-303	`sad. -0.02 ruf. -0.02 dom. +0.01 bre. -0.10`	HIS	chainID: A, resSeq: 91, molecule: Cytochrome c
7lq5-A-304	`sad. +0.01 ruf. +0.01 dom. -0.02 bre. -0.14`	HIS	chainID: A, resSeq: 97, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 492.0 Å³ d(Fe-oop): 0.064 Å
7lq5-A-304	`sad. +0.01 ruf. +0.01 dom. -0.02 bre. -0.14`	HIS	chainID: A, resSeq: 111, molecule: Cytochrome c
7lq5-A-305	`sad. +0.02 ruf. +0.00 dom. +0.02 bre. -0.15`	HIS	chainID: A, resSeq: 158, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 440.0 Å³ d(Fe-oop): 0.020 Å
7lq5-A-305	`sad. +0.02 ruf. +0.00 dom. +0.02 bre. -0.15`	HIS	chainID: A, resSeq: 241, molecule: Cytochrome c
7lq5-A-306	`sad. +0.00 ruf. +0.00 dom. +0.02 bre. -0.17`	HIS	chainID: A, resSeq: 183, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 591.0 Å³ d(Fe-oop): 0.058 Å
7lq5-A-306	`sad. +0.00 ruf. +0.00 dom. +0.02 bre. -0.17`	HIS	chainID: A, resSeq: 194, molecule: Cytochrome c
7lq5-A-307	`sad. +0.00 ruf. +0.01 dom. +0.02 bre. -0.08`	HIS	chainID: A, resSeq: 182, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 475.0 Å³ d(Fe-oop): 0.037 Å
7lq5-A-307	`sad. +0.00 ruf. +0.01 dom. +0.02 bre. -0.08`	HIS	chainID: A, resSeq: 209, molecule: Cytochrome c
7lq5-A-308	`sad. +0.01 ruf. -0.01 dom. -0.04 bre. -0.16`	HIS	chainID: A, resSeq: 215, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 473.0 Å³ d(Fe-oop): 0.064 Å
7lq5-A-308	`sad. +0.01 ruf. -0.01 dom. -0.04 bre. -0.16`	HIS	chainID: A, resSeq: 252, molecule: Cytochrome c
7lq5-B-301	`sad. -0.03 ruf. +0.01 dom. -0.03 bre. -0.10`	HIS	chainID: B, resSeq: 30, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 607.0 Å³ d(Fe-oop): 0.077 Å
7lq5-B-301	`sad. -0.03 ruf. +0.01 dom. -0.03 bre. -0.10`	HIS	chainID: B, resSeq: 96, molecule: Cytochrome c
7lq5-B-302	`sad. -0.01 ruf. +0.01 dom. -0.01 bre. -0.10`	HIS	chainID: B, resSeq: 41, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 396.0 Å³ d(Fe-oop): 0.028 Å
7lq5-B-302	`sad. -0.01 ruf. +0.01 dom. -0.01 bre. -0.10`	HIS	chainID: B, resSeq: 69, molecule: Cytochrome c
7lq5-B-303	`sad. -0.02 ruf. -0.02 dom. +0.01 bre. -0.10`	HIS	chainID: B, resSeq: 40, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 524.0 Å³ d(Fe-oop): 0.013 Å
7lq5-B-303	`sad. -0.02 ruf. -0.02 dom. +0.01 bre. -0.10`	HIS	chainID: B, resSeq: 91, molecule: Cytochrome c
7lq5-B-304	`sad. +0.01 ruf. +0.01 dom. -0.02 bre. -0.14`	HIS	chainID: B, resSeq: 97, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 483.0 Å³ d(Fe-oop): 0.064 Å
7lq5-B-304	`sad. +0.01 ruf. +0.01 dom. -0.02 bre. -0.14`	HIS	chainID: B, resSeq: 111, molecule: Cytochrome c
7lq5-B-305	`sad. +0.02 ruf. +0.00 dom. +0.02 bre. -0.15`	HIS	chainID: B, resSeq: 158, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 421.0 Å³ d(Fe-oop): 0.020 Å
7lq5-B-305	`sad. +0.02 ruf. +0.00 dom. +0.02 bre. -0.15`	HIS	chainID: B, resSeq: 241, molecule: Cytochrome c
7lq5-B-306	`sad. +0.00 ruf. +0.00 dom. +0.02 bre. -0.17`	HIS	chainID: B, resSeq: 183, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 570.0 Å³ d(Fe-oop): 0.058 Å
7lq5-B-306	`sad. +0.00 ruf. +0.00 dom. +0.02 bre. -0.17`	HIS	chainID: B, resSeq: 194, molecule: Cytochrome c
7lq5-B-307	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. -0.08`	HIS	chainID: B, resSeq: 182, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 471.0 Å³ d(Fe-oop): 0.036 Å
7lq5-B-307	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. -0.08`	HIS	chainID: B, resSeq: 209, molecule: Cytochrome c
7lq5-C-301	`sad. -0.04 ruf. +0.01 dom. -0.03 bre. -0.10`	HIS	chainID: C, resSeq: 30, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 581.0 Å³ d(Fe-oop): 0.078 Å
7lq5-C-301	`sad. -0.04 ruf. +0.01 dom. -0.03 bre. -0.10`	HIS	chainID: C, resSeq: 96, molecule: Cytochrome c
7lq5-C-302	`sad. -0.00 ruf. +0.01 dom. -0.01 bre. -0.10`	HIS	chainID: C, resSeq: 41, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 502.0 Å³ d(Fe-oop): 0.028 Å
7lq5-C-302	`sad. -0.00 ruf. +0.01 dom. -0.01 bre. -0.10`	HIS	chainID: C, resSeq: 69, molecule: Cytochrome c
7lq5-C-303	`sad. -0.02 ruf. -0.02 dom. +0.01 bre. -0.10`	HIS	chainID: C, resSeq: 40, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 542.0 Å³ d(Fe-oop): 0.013 Å
7lq5-C-303	`sad. -0.02 ruf. -0.02 dom. +0.01 bre. -0.10`	HIS	chainID: C, resSeq: 91, molecule: Cytochrome c
7lq5-C-304	`sad. +0.01 ruf. +0.01 dom. -0.02 bre. -0.14`	HIS	chainID: C, resSeq: 97, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 459.0 Å³ d(Fe-oop): 0.064 Å
7lq5-C-304	`sad. +0.01 ruf. +0.01 dom. -0.02 bre. -0.14`	HIS	chainID: C, resSeq: 111, molecule: Cytochrome c
7lq5-C-305	`sad. +0.02 ruf. +0.00 dom. +0.02 bre. -0.15`	HIS	chainID: C, resSeq: 158, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 436.0 Å³ d(Fe-oop): 0.020 Å
7lq5-C-305	`sad. +0.02 ruf. +0.00 dom. +0.02 bre. -0.15`	HIS	chainID: C, resSeq: 241, molecule: Cytochrome c
7lq5-C-306	`sad. +0.00 ruf. +0.00 dom. +0.02 bre. -0.17`	HIS	chainID: C, resSeq: 183, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 576.0 Å³ d(Fe-oop): 0.058 Å
7lq5-C-306	`sad. +0.00 ruf. +0.00 dom. +0.02 bre. -0.17`	HIS	chainID: C, resSeq: 194, molecule: Cytochrome c
7lq5-C-307	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. -0.08`	HIS	chainID: C, resSeq: 182, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 480.0 Å³ d(Fe-oop): 0.037 Å
7lq5-C-307	`sad. -0.00 ruf. +0.01 dom. +0.02 bre. -0.08`	HIS	chainID: C, resSeq: 209, molecule: Cytochrome c
7lq5-C-308	`sad. +0.01 ruf. -0.01 dom. -0.03 bre. -0.16`	HIS	chainID: C, resSeq: 215, molecule: Cytochrome c	electron transporter oligomeric count: 3 pocket vol.: 354.0 Å³ d(Fe-oop): 0.064 Å
7lq5-C-308	`sad. +0.01 ruf. -0.01 dom. -0.03 bre. -0.16`	HIS	chainID: C, resSeq: 252, molecule: Cytochrome c