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PyDISH No: 15078

PDB: 7jrp,
chainID: D, resSeq: 501
heme type: C

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.8 Å

axial ligand #1: HIS

chainID: D,
resSeq: 106,
Coordination distance[Å]: 1.924
molecule: cytochrome c1-2, heme protein, mitochondrial
Organism: Vigna radiata var. radiata

axial ligand #2: MET

chainID: D,
resSeq: 225,
Coordination distance[Å]: 2.514
molecule: same as ligand #1

List of other hemes in pdb:7jrp

ID of heme	Distortion	Axial ligands on heme		Function & structure
7jrp-C-402	`sad. -0.00 ruf. +0.26 dom. -0.06 bre. +0.06`	HIS	chainID: C, resSeq: 88, molecule: COB	oxidoreductase oligomeric count: 30 pocket vol.: 407.0 Å³ d(Fe-oop): 0.024 Å
7jrp-C-402	`sad. -0.00 ruf. +0.26 dom. -0.06 bre. +0.06`	HIS	chainID: C, resSeq: 189, molecule: COB
7jrp-C-403	`sad. -0.07 ruf. -0.55 dom. +0.15 bre. +0.07`	HIS	chainID: C, resSeq: 102, molecule: COB	oxidoreductase oligomeric count: 30 pocket vol.: 419.0 Å³ d(Fe-oop): 0.055 Å
7jrp-C-403	`sad. -0.07 ruf. -0.55 dom. +0.15 bre. +0.07`	HIS	chainID: C, resSeq: 203, molecule: COB
7jrp-O-403	`sad. -0.03 ruf. +0.54 dom. +0.04 bre. +0.08`	HIS	chainID: O, resSeq: 88, molecule: COB	oxidoreductase oligomeric count: 30 pocket vol.: 422.0 Å³ d(Fe-oop): 0.015 Å
7jrp-O-403	`sad. -0.03 ruf. +0.54 dom. +0.04 bre. +0.08`	HIS	chainID: O, resSeq: 189, molecule: COB
7jrp-O-404	`sad. -0.06 ruf. -0.45 dom. +0.10 bre. +0.07`	HIS	chainID: O, resSeq: 102, molecule: COB	oxidoreductase oligomeric count: 30 pocket vol.: 419.0 Å³ d(Fe-oop): 0.039 Å
7jrp-O-404	`sad. -0.06 ruf. -0.45 dom. +0.10 bre. +0.07`	HIS	chainID: O, resSeq: 203, molecule: COB
7jrp-P-402	`sad. +0.03 ruf. -0.51 dom. -0.24 bre. +0.00`	HIS	chainID: P, resSeq: 106, molecule: cytochrome c1-2, heme protein, mitochondrial	electron transporter oligomeric count: 30 pocket vol.: 410.0 Å³ d(Fe-oop): 0.095 Å
7jrp-P-402	`sad. +0.03 ruf. -0.51 dom. -0.24 bre. +0.00`	MET	chainID: P, resSeq: 225, molecule: cytochrome c1-2, heme protein, mitochondrial
7jrp-a-601	`sad. +0.00 ruf. +1.53 dom. +0.23 bre. +0.14`	HIS	chainID: a, resSeq: 378, molecule: COX1	oxidoreductase oligomeric count: 30 pocket vol.: 783.0 Å³ d(Fe-oop): 0.079 Å
7jrp-a-601	`sad. +0.00 ruf. +1.53 dom. +0.23 bre. +0.14`	Not assigned.
7jrp-a-602	`sad. -0.07 ruf. +0.32 dom. +0.30 bre. -0.02`	HIS	chainID: a, resSeq: 64, molecule: COX1	oxidoreductase oligomeric count: 30 pocket vol.: 700.0 Å³ d(Fe-oop): 0.114 Å
7jrp-a-602	`sad. -0.07 ruf. +0.32 dom. +0.30 bre. -0.02`	HIS	chainID: a, resSeq: 380, molecule: COX1