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PyDISH No: 14989

PDB: 7e1w,
chainID: R, resSeq: 606
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.67 Å

axial ligand #1: HIS

chainID: R,
resSeq: 397,
Coordination distance[Å]: 2.738
molecule: Cytochrome c oxidase subunit 1
Organism: Mycolicibacterium smegmatis MC2 51

List of other hemes in pdb:7e1w

ID of heme Distortion Axial ligands on heme Function & structure
7e1w-F-606
sad. -0.02
ruf. +0.17
dom. +0.35
bre. -0.01
HIS chainID: F,
resSeq: 397,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 20
pocket vol.: 887.0 Å3
d(Fe-oop): 0.147 Å
Not assigned.
7e1w-F-607
sad. -0.10
ruf. +0.44
dom. +0.28
bre. +0.00
HIS chainID: F,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 20
pocket vol.: 761.0 Å3
d(Fe-oop): 0.123 Å
HIS chainID: F, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7e1w-R-607
sad. -0.10
ruf. +0.44
dom. +0.28
bre. +0.00
HIS chainID: R,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 20
pocket vol.: 764.0 Å3
d(Fe-oop): 0.122 Å
HIS chainID: R, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7e1w-N-601
sad. -1.09
ruf. -0.39
dom. -0.03
bre. +0.03
HIS chainID: N,
resSeq: 128,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 451.0 Å3
d(Fe-oop): 0.102 Å
HIS chainID: N, resSeq: 231,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1w-N-602
sad. -0.66
ruf. +0.07
dom. -0.02
bre. -0.07
HIS chainID: N,
resSeq: 114,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 499.0 Å3
d(Fe-oop): 0.063 Å
HIS chainID: N, resSeq: 216,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1w-O-304
sad. +0.32
ruf. -0.58
dom. +0.29
bre. -0.15
HIS chainID: O,
resSeq: 77,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 530.0 Å3
d(Fe-oop): 0.108 Å
MET chainID: O, resSeq: 108,
molecule: Cytochrome bc1 complex cytochrome c subunit
7e1w-O-305
sad. +0.21
ruf. -0.55
dom. +0.13
bre. -0.14
HIS chainID: O,
resSeq: 178,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 384.0 Å3
d(Fe-oop): 0.057 Å
MET chainID: O, resSeq: 215,
molecule: Cytochrome bc1 complex cytochrome c subunit
7e1w-B-601
sad. -1.09
ruf. -0.39
dom. -0.03
bre. +0.03
HIS chainID: B,
resSeq: 128,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 461.0 Å3
d(Fe-oop): 0.103 Å
HIS chainID: B, resSeq: 231,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1w-B-602
sad. -0.66
ruf. +0.07
dom. -0.02
bre. -0.07
HIS chainID: B,
resSeq: 114,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 468.0 Å3
d(Fe-oop): 0.063 Å
HIS chainID: B, resSeq: 216,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1w-C-301
sad. +0.32
ruf. -0.58
dom. +0.29
bre. -0.15
HIS chainID: C,
resSeq: 77,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 523.0 Å3
d(Fe-oop): 0.109 Å
MET chainID: C, resSeq: 108,
molecule: Cytochrome bc1 complex cytochrome c subunit
7e1w-C-302
sad. +0.21
ruf. -0.55
dom. +0.13
bre. -0.15
HIS chainID: C,
resSeq: 178,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 394.0 Å3
d(Fe-oop): 0.057 Å
MET chainID: C, resSeq: 215,
molecule: Cytochrome bc1 complex cytochrome c subunit