Browser

PyDISH No: 14977

PDB: 7e1v,
chainID: R, resSeq: 605
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.68 Å

axial ligand #1: HIS

chainID: R,
resSeq: 397,
Coordination distance[Å]: 2.801
molecule: Cytochrome c oxidase subunit 1
Organism: Mycolicibacterium smegmatis MC2 51

List of other hemes in pdb:7e1v

ID of heme Distortion Axial ligands on heme Function & structure
7e1v-F-606
sad. -0.04
ruf. +0.19
dom. +0.32
bre. -0.58
HIS chainID: F,
resSeq: 397,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 20
pocket vol.: 882.0 Å3
d(Fe-oop): 0.123 Å
Not assigned.
7e1v-F-607
sad. -0.11
ruf. +0.44
dom. +0.27
bre. -0.55
HIS chainID: F,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 20
pocket vol.: 772.0 Å3
d(Fe-oop): 0.106 Å
HIS chainID: F, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7e1v-R-606
sad. -0.09
ruf. +0.22
dom. +0.22
bre. -0.57
HIS chainID: R,
resSeq: 86,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 20
pocket vol.: 774.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: R, resSeq: 399,
molecule: Cytochrome c oxidase subunit 1
7e1v-N-601
sad. -1.21
ruf. -0.41
dom. +0.15
bre. -0.05
HIS chainID: N,
resSeq: 128,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 444.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: N, resSeq: 231,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1v-N-602
sad. -0.62
ruf. +0.06
dom. -0.06
bre. -0.14
HIS chainID: N,
resSeq: 114,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 463.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: N, resSeq: 216,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1v-O-303
sad. +0.21
ruf. -0.88
dom. +0.37
bre. -0.17
HIS chainID: O,
resSeq: 77,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 655.0 Å3
d(Fe-oop): 0.030 Å
MET chainID: O, resSeq: 108,
molecule: Cytochrome bc1 complex cytochrome c subunit
7e1v-O-304
sad. +0.10
ruf. -0.75
dom. +0.18
bre. -0.20
HIS chainID: O,
resSeq: 178,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 424.0 Å3
d(Fe-oop): 0.055 Å
MET chainID: O, resSeq: 215,
molecule: Cytochrome bc1 complex cytochrome c subunit
7e1v-B-602
sad. -1.19
ruf. -0.45
dom. +0.09
bre. -0.04
HIS chainID: B,
resSeq: 128,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 454.0 Å3
d(Fe-oop): 0.102 Å
HIS chainID: B, resSeq: 231,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1v-B-603
sad. -0.63
ruf. -0.09
dom. -0.00
bre. -0.13
HIS chainID: B,
resSeq: 114,
molecule: Cytochrome bc1 complex cytochrome b subunit
translocase
oligomeric count: 20
pocket vol.: 470.0 Å3
d(Fe-oop): 0.093 Å
HIS chainID: B, resSeq: 216,
molecule: Cytochrome bc1 complex cytochrome b subunit
7e1v-C-301
sad. -0.60
ruf. -0.69
dom. +0.16
bre. -0.19
HIS chainID: C,
resSeq: 77,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 581.0 Å3
d(Fe-oop): 0.020 Å
MET chainID: C, resSeq: 108,
molecule: Cytochrome bc1 complex cytochrome c subunit
7e1v-C-302
sad. -0.04
ruf. -0.64
dom. +0.17
bre. -0.21
HIS chainID: C,
resSeq: 178,
molecule: Cytochrome bc1 complex cytochrome c subunit
translocase
oligomeric count: 20
pocket vol.: 415.0 Å3
d(Fe-oop): 0.080 Å
MET chainID: C, resSeq: 215,
molecule: Cytochrome bc1 complex cytochrome c subunit