Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 14925

PDB: 7dkf,
chainID: A3, resSeq: 601
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 8.3 Å

axial ligand #1: HIS

chainID: A3,
resSeq: 61,
Coordination distance[Å]: 1.834
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Bos taurus

axial ligand #2: HIS

chainID: A3,
resSeq: 378,
Coordination distance[Å]: 1.9
molecule: same as ligand #1

List of other hemes in pdb:7dkf

ID of heme	Distortion	Axial ligands on heme		Function & structure
7dkf-C1-401	`sad. -0.16 ruf. +0.07 dom. -0.22 bre. -0.07`	HIS	chainID: C1, resSeq: 83, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 411.0 Å³ d(Fe-oop): 0.280 Å
7dkf-C1-401	`sad. -0.16 ruf. +0.07 dom. -0.22 bre. -0.07`	HIS	chainID: C1, resSeq: 182, molecule: Cytochrome b
7dkf-C1-402	`sad. -0.54 ruf. -0.63 dom. +0.02 bre. -0.07`	HIS	chainID: C1, resSeq: 97, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 383.0 Å³ d(Fe-oop): 0.056 Å
7dkf-C1-402	`sad. -0.54 ruf. -0.63 dom. +0.02 bre. -0.07`	HIS	chainID: C1, resSeq: 196, molecule: Cytochrome b
7dkf-D1-301	`sad. -0.33 ruf. -0.68 dom. +0.16 bre. +0.00`	HIS	chainID: D1, resSeq: 41, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 80 pocket vol.: 442.0 Å³ d(Fe-oop): 0.027 Å
7dkf-D1-301	`sad. -0.33 ruf. -0.68 dom. +0.16 bre. +0.00`	MET	chainID: D1, resSeq: 160, molecule: Cytochrome c1, heme protein, mitochondrial
7dkf-O1-401	`sad. -0.22 ruf. -0.08 dom. -0.23 bre. -0.17`	HIS	chainID: O1, resSeq: 83, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 403.0 Å³ d(Fe-oop): 0.149 Å
7dkf-O1-401	`sad. -0.22 ruf. -0.08 dom. -0.23 bre. -0.17`	HIS	chainID: O1, resSeq: 182, molecule: Cytochrome b
7dkf-O1-402	`sad. -0.60 ruf. -0.73 dom. +0.24 bre. -0.06`	HIS	chainID: O1, resSeq: 97, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 376.0 Å³ d(Fe-oop): 0.206 Å
7dkf-O1-402	`sad. -0.60 ruf. -0.73 dom. +0.24 bre. -0.06`	HIS	chainID: O1, resSeq: 196, molecule: Cytochrome b
7dkf-P1-301	`sad. -0.39 ruf. -0.66 dom. +0.03 bre. +0.02`	HIS	chainID: P1, resSeq: 41, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 80 pocket vol.: 448.0 Å³ d(Fe-oop): 0.020 Å
7dkf-P1-301	`sad. -0.39 ruf. -0.66 dom. +0.03 bre. +0.02`	MET	chainID: P1, resSeq: 160, molecule: Cytochrome c1, heme protein, mitochondrial
7dkf-A3-602	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	HIS	chainID: A3, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 80 pocket vol.: 736.0 Å³ d(Fe-oop): 0.025 Å
7dkf-A3-602	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	Not assigned.