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PyDISH No: 14902

PDB: 7dgr,
chainID: A9, resSeq: 601
heme type: A

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 4.6 Å

axial ligand #1: HIS

chainID: A9,
resSeq: 61,
Coordination distance[Å]: 1.834
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Bos taurus

axial ligand #2: HIS

chainID: A9,
resSeq: 378,
Coordination distance[Å]: 1.9
molecule: same as ligand #1

List of other hemes in pdb:7dgr

ID of heme	Distortion	Axial ligands on heme		Function & structure
7dgr-m-401	`sad. -0.22 ruf. -0.36 dom. -0.11 bre. +0.46`	HIS	chainID: m, resSeq: 83, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 498.0 Å³ d(Fe-oop): 0.071 Å
7dgr-m-401	`sad. -0.22 ruf. -0.36 dom. -0.11 bre. +0.46`	HIS	chainID: m, resSeq: 182, molecule: Cytochrome b
7dgr-m-402	`sad. -0.31 ruf. -0.33 dom. +0.15 bre. +0.45`	HIS	chainID: m, resSeq: 97, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 519.0 Å³ d(Fe-oop): 0.202 Å
7dgr-m-402	`sad. -0.31 ruf. -0.33 dom. +0.15 bre. +0.45`	HIS	chainID: m, resSeq: 196, molecule: Cytochrome b
7dgr-o-301	`sad. -0.24 ruf. -1.09 dom. -0.12 bre. +0.42`	HIS	chainID: o, resSeq: 41, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 80 pocket vol.: 566.0 Å³ d(Fe-oop): 0.267 Å
7dgr-o-301	`sad. -0.24 ruf. -1.09 dom. -0.12 bre. +0.42`	MET	chainID: o, resSeq: 160, molecule: Cytochrome c1, heme protein, mitochondrial
7dgr-y-401	`sad. -0.22 ruf. -0.36 dom. -0.11 bre. +0.46`	HIS	chainID: y, resSeq: 83, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 503.0 Å³ d(Fe-oop): 0.072 Å
7dgr-y-401	`sad. -0.22 ruf. -0.36 dom. -0.11 bre. +0.46`	HIS	chainID: y, resSeq: 182, molecule: Cytochrome b
7dgr-y-402	`sad. -0.31 ruf. -0.33 dom. +0.15 bre. +0.45`	HIS	chainID: y, resSeq: 97, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 513.0 Å³ d(Fe-oop): 0.202 Å
7dgr-y-402	`sad. -0.31 ruf. -0.33 dom. +0.15 bre. +0.45`	HIS	chainID: y, resSeq: 196, molecule: Cytochrome b
7dgr-z-301	`sad. -0.24 ruf. -1.09 dom. -0.12 bre. +0.42`	HIS	chainID: z, resSeq: 41, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 80 pocket vol.: 547.0 Å³ d(Fe-oop): 0.268 Å
7dgr-z-301	`sad. -0.24 ruf. -1.09 dom. -0.12 bre. +0.42`	MET	chainID: z, resSeq: 160, molecule: Cytochrome c1, heme protein, mitochondrial
7dgr-A9-602	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	HIS	chainID: A9, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	translocase oligomeric count: 80 pocket vol.: 760.0 Å³ d(Fe-oop): 0.024 Å
7dgr-A9-602	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	Not assigned.