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PyDISH No: 14901

PDB: 7dgr,
chainID: z, resSeq: 301
heme type: C

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 4.6 Å

axial ligand #1: HIS

chainID: z,
resSeq: 41,
Coordination distance[Å]: 2.301
molecule: Cytochrome c1, heme protein, mitochondrial
EC number: 7.1.1.8
Organism: Bos taurus

axial ligand #2: MET

chainID: z,
resSeq: 160,
Coordination distance[Å]: 2.87
molecule: same as ligand #1

List of other hemes in pdb:7dgr

ID of heme Distortion Axial ligands on heme Function & structure
7dgr-m-401
sad. -0.22
ruf. -0.36
dom. -0.11
bre. +0.46
HIS chainID: m,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 498.0 Å3
d(Fe-oop): 0.071 Å
HIS chainID: m, resSeq: 182,
molecule: Cytochrome b
7dgr-m-402
sad. -0.31
ruf. -0.33
dom. +0.15
bre. +0.45
HIS chainID: m,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 519.0 Å3
d(Fe-oop): 0.202 Å
HIS chainID: m, resSeq: 196,
molecule: Cytochrome b
7dgr-o-301
sad. -0.24
ruf. -1.09
dom. -0.12
bre. +0.42
HIS chainID: o,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 80
pocket vol.: 566.0 Å3
d(Fe-oop): 0.267 Å
MET chainID: o, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial
7dgr-y-401
sad. -0.22
ruf. -0.36
dom. -0.11
bre. +0.46
HIS chainID: y,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 503.0 Å3
d(Fe-oop): 0.072 Å
HIS chainID: y, resSeq: 182,
molecule: Cytochrome b
7dgr-y-402
sad. -0.31
ruf. -0.33
dom. +0.15
bre. +0.45
HIS chainID: y,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 513.0 Å3
d(Fe-oop): 0.202 Å
HIS chainID: y, resSeq: 196,
molecule: Cytochrome b
7dgr-A9-601
sad. -0.59
ruf. -0.27
dom. +0.29
bre. +0.04
HIS chainID: A9,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 80
pocket vol.: 613.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: A9, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
7dgr-A9-602
sad. -0.27
ruf. -0.21
dom. +0.31
bre. -0.11
HIS chainID: A9,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 80
pocket vol.: 760.0 Å3
d(Fe-oop): 0.024 Å
Not assigned.