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PyDISH No: 14562

PDB: 6yrd,
chainID: F, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.75 Å
origomeric count: 1

axial ligand #1: HIS

chainID: F,
resSeq: 225,
Coordination distance[Å]: 2.122
molecule: Putative iron-dependent peroxidase
Organism: Streptomyces lividans 1326

axial ligand #2: O

chainID: F,
resSeq: 402,
Coordination distance[Å]: 1.799
molecule: OXYGEN ATOM

List of other hemes in pdb:6yrd

ID of heme Distortion Axial ligands on heme Function & structure
6yrd-A-401
sad. +0.25
ruf. +0.38
dom. -0.01
bre. -0.01
HIS chainID: A,
resSeq: 225,
molecule: Putative iron-dependent peroxidase
oxidoreductase
oligomeric count: 1
pocket vol.: 392.0 Å3
d(Fe-oop): 0.016 Å
O chainID: A, resSeq: 403,
molecule: OXYGEN ATOM
6yrd-B-401
sad. +0.24
ruf. +0.34
dom. -0.02
bre. +0.06
HIS chainID: B,
resSeq: 225,
molecule: Putative iron-dependent peroxidase
oxidoreductase
oligomeric count: 1
pocket vol.: 399.0 Å3
d(Fe-oop): 0.003 Å
O chainID: B, resSeq: 402,
molecule: OXYGEN ATOM
6yrd-C-401
sad. +0.33
ruf. +0.32
dom. -0.05
bre. +0.05
HIS chainID: C,
resSeq: 225,
molecule: Putative iron-dependent peroxidase
oxidoreductase
oligomeric count: 1
pocket vol.: 389.0 Å3
d(Fe-oop): 0.001 Å
O chainID: C, resSeq: 403,
molecule: OXYGEN ATOM
6yrd-D-401
sad. +0.22
ruf. +0.37
dom. -0.03
bre. -0.03
HIS chainID: D,
resSeq: 225,
molecule: Putative iron-dependent peroxidase
oxidoreductase
oligomeric count: 1
pocket vol.: 378.0 Å3
d(Fe-oop): 0.004 Å
O chainID: D, resSeq: 403,
molecule: OXYGEN ATOM
6yrd-E-401
sad. +0.28
ruf. +0.39
dom. +0.04
bre. +0.06
HIS chainID: E,
resSeq: 225,
molecule: Putative iron-dependent peroxidase
oxidoreductase
oligomeric count: 1
pocket vol.: 398.0 Å3
d(Fe-oop): 0.015 Å
O chainID: E, resSeq: 402,
molecule: OXYGEN ATOM