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PyDISH No: 14485

PDB: 6xkx,
chainID: o, resSeq: 301
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 6.1 Å

axial ligand #1: HIS

chainID: o,
resSeq: 72,
Coordination distance[Å]: 1.866
molecule: Cytochrome c oxidase, Cbb3-type, subunit II
EC number: 1.9.3.1
Organism: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)

axial ligand #2: MET

chainID: o,
resSeq: 140,
Coordination distance[Å]: 2.248
molecule: same as ligand #1

List of other hemes in pdb:6xkx

ID of heme	Distortion	Axial ligands on heme		Function & structure
6xkx-C-501	`sad. -0.09 ruf. -0.29 dom. -0.05 bre. -0.17`	HIS	chainID: C, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 9 pocket vol.: 444.0 Å³ d(Fe-oop): 0.001 Å
6xkx-C-501	`sad. -0.09 ruf. -0.29 dom. -0.05 bre. -0.17`	HIS	chainID: C, resSeq: 198, molecule: Cytochrome b
6xkx-C-502	`sad. -0.41 ruf. -0.52 dom. +0.15 bre. -0.20`	HIS	chainID: C, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 9 pocket vol.: 450.0 Å³ d(Fe-oop): 0.003 Å
6xkx-C-502	`sad. -0.41 ruf. -0.52 dom. +0.15 bre. -0.20`	HIS	chainID: C, resSeq: 212, molecule: Cytochrome b
6xkx-D-501	`sad. +0.03 ruf. -0.22 dom. -0.02 bre. -0.24`	HIS	chainID: D, resSeq: 38, molecule: Cytochrome c1	electron transporter oligomeric count: 9 pocket vol.: 461.0 Å³ d(Fe-oop): 0.122 Å
6xkx-D-501	`sad. +0.03 ruf. -0.22 dom. -0.02 bre. -0.24`	MET	chainID: D, resSeq: 183, molecule: Cytochrome c1
6xkx-P-501	`sad. -0.09 ruf. -0.29 dom. -0.05 bre. -0.17`	HIS	chainID: P, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 9 pocket vol.: 454.0 Å³ d(Fe-oop): 0.001 Å
6xkx-P-501	`sad. -0.09 ruf. -0.29 dom. -0.05 bre. -0.17`	HIS	chainID: P, resSeq: 198, molecule: Cytochrome b
6xkx-P-502	`sad. -0.41 ruf. -0.52 dom. +0.15 bre. -0.20`	HIS	chainID: P, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 9 pocket vol.: 449.0 Å³ d(Fe-oop): 0.003 Å
6xkx-P-502	`sad. -0.41 ruf. -0.52 dom. +0.15 bre. -0.20`	HIS	chainID: P, resSeq: 212, molecule: Cytochrome b
6xkx-Q-501	`sad. +0.03 ruf. -0.22 dom. -0.02 bre. -0.24`	HIS	chainID: Q, resSeq: 38, molecule: Cytochrome c1	electron transporter oligomeric count: 9 pocket vol.: 472.0 Å³ d(Fe-oop): 0.121 Å
6xkx-Q-501	`sad. +0.03 ruf. -0.22 dom. -0.02 bre. -0.24`	MET	chainID: Q, resSeq: 183, molecule: Cytochrome c1
6xkx-n-601	`sad. +1.35 ruf. +0.51 dom. +0.20 bre. -0.07`	HIS	chainID: n, resSeq: 402, molecule: Cytochrome c oxidase, Cbb3-type, subunit I	oxidoreductase oligomeric count: 9 pocket vol.: 419.0 Å³ d(Fe-oop): 0.084 Å
6xkx-n-601	`sad. +1.35 ruf. +0.51 dom. +0.20 bre. -0.07`	Not assigned.
6xkx-n-602	`sad. +0.28 ruf. +0.19 dom. +0.20 bre. -0.20`	HIS	chainID: n, resSeq: 114, molecule: Cytochrome c oxidase, Cbb3-type, subunit I	oxidoreductase oligomeric count: 9 pocket vol.: 365.0 Å³ d(Fe-oop): 0.051 Å
6xkx-n-602	`sad. +0.28 ruf. +0.19 dom. +0.20 bre. -0.20`	HIS	chainID: n, resSeq: 404, molecule: Cytochrome c oxidase, Cbb3-type, subunit I
6xkx-p-501	`sad. -0.09 ruf. -0.60 dom. +0.15 bre. +0.02`	MET	chainID: p, resSeq: 174, molecule: Cbb3-type cytochrome c oxidase subunit CcoP,Cytochrome c-type cyt cy	electron transporter oligomeric count: 9 pocket vol.: 451.0 Å³ d(Fe-oop): 0.006 Å
6xkx-p-501	`sad. -0.09 ruf. -0.60 dom. +0.15 bre. +0.02`	HIS	chainID: p, resSeq: 223, molecule: Cbb3-type cytochrome c oxidase subunit CcoP,Cytochrome c-type cyt cy
6xkx-p-502	`sad. -0.37 ruf. -0.46 dom. +0.17 bre. +0.05`	HIS	chainID: p, resSeq: 125, molecule: Cbb3-type cytochrome c oxidase subunit CcoP,Cytochrome c-type cyt cy	electron transporter oligomeric count: 9 pocket vol.: 283.0 Å³ d(Fe-oop): 0.011 Å
6xkx-p-502	`sad. -0.37 ruf. -0.46 dom. +0.17 bre. +0.05`	MET	chainID: p, resSeq: 264, molecule: Cbb3-type cytochrome c oxidase subunit CcoP,Cytochrome c-type cyt cy