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PyDISH No: 14261

PDB: 6vbn,
chainID: D, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 3.18 Å

axial ligand #1: HIS

chainID: D,
resSeq: 328,
Coordination distance[Å]: 2.392
molecule: Tryptophan 2,3-dioxygenase
EC number: 1.13.11.11
Organism: Homo sapiens

axial ligand #2: QVY

chainID: C,
resSeq: 402,
Coordination distance[Å]: 2.247
molecule: 1,5-anhydro-2,3-dideoxy-3-[(5S)-5H-imidazo[5,1-a]isoindol-5-yl]-D-threo-pentitol

List of other hemes in pdb:6vbn

ID of heme	Distortion	Axial ligands on heme		Function & structure
6vbn-A-401	`sad. +0.11 ruf. -0.39 dom. +0.06 bre. +0.11`	HIS	chainID: A, resSeq: 328, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 499.0 Å³ d(Fe-oop): 0.089 Å
6vbn-A-401	`sad. +0.11 ruf. -0.39 dom. +0.06 bre. +0.11`	QVY	chainID: A, resSeq: 402, molecule: 1,5-anhydro-2,3-dideoxy-3-[(5S)-5H-imidazo[5,1-a]isoindol-5-yl]-D-threo-pentitol
6vbn-B-401	`sad. +0.19 ruf. -0.41 dom. +0.07 bre. +0.10`	HIS	chainID: B, resSeq: 328, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 469.0 Å³ d(Fe-oop): 0.107 Å
6vbn-B-401	`sad. +0.19 ruf. -0.41 dom. +0.07 bre. +0.10`	QVY	chainID: B, resSeq: 402, molecule: 1,5-anhydro-2,3-dideoxy-3-[(5S)-5H-imidazo[5,1-a]isoindol-5-yl]-D-threo-pentitol
6vbn-C-401	`sad. +0.11 ruf. -0.39 dom. +0.05 bre. +0.13`	HIS	chainID: C, resSeq: 328, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 488.0 Å³ d(Fe-oop): 0.080 Å
6vbn-C-401	`sad. +0.11 ruf. -0.39 dom. +0.05 bre. +0.13`	QVY	chainID: C, resSeq: 403, molecule: 1,5-anhydro-2,3-dideoxy-3-[(5S)-5H-imidazo[5,1-a]isoindol-5-yl]-D-threo-pentitol