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Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 2.55 Å
axial ligand #1: HIS
chainID: D,resSeq: 301,
Coordination distance[Å]: 2.273
molecule: Nitrite reductase (cytochrome; ammonia-forming)
EC number: 1.7.2.2
Organism: Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
axial ligand #2: HIS
chainID: D,resSeq: 412,
Coordination distance[Å]: 2.247
molecule: same as ligand #1
List of other hemes in pdb:6v0a
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
6v0a-A-501 |
sad. +0.56 ruf. -0.67 dom. +0.09 bre. -0.14 |
LYS | chainID: A, resSeq: 133, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 432.0 Å3 d(Fe-oop): 0.064 Å |
| SO4 | chainID: A, resSeq: 506, molecule: SULFATE ION |
|||
6v0a-A-502 |
sad. +0.49 ruf. -0.67 dom. -0.26 bre. -0.10 |
HIS | chainID: A, resSeq: 175, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 389.0 Å3 d(Fe-oop): 0.012 Å |
| HIS | chainID: A, resSeq: 315, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-A-503 |
sad. -0.25 ruf. -1.11 dom. +0.03 bre. -0.00 |
HIS | chainID: A, resSeq: 108, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 427.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: A, resSeq: 218, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-A-504 |
sad. +0.61 ruf. -1.10 dom. -0.14 bre. +0.06 |
HIS | chainID: A, resSeq: 301, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 380.0 Å3 d(Fe-oop): 0.148 Å |
| HIS | chainID: A, resSeq: 412, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-A-505 |
sad. +0.24 ruf. -0.96 dom. +0.12 bre. -0.14 |
HIS | chainID: A, resSeq: 290, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 477.0 Å3 d(Fe-oop): 0.084 Å |
| HIS | chainID: A, resSeq: 332, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-B-501 |
sad. +0.52 ruf. -0.57 dom. -0.02 bre. -0.30 |
LYS | chainID: B, resSeq: 133, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 440.0 Å3 d(Fe-oop): 0.049 Å |
| SO4 | chainID: B, resSeq: 506, molecule: SULFATE ION |
|||
6v0a-B-502 |
sad. +0.45 ruf. -0.66 dom. -0.40 bre. -0.16 |
HIS | chainID: B, resSeq: 175, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 392.0 Å3 d(Fe-oop): 0.016 Å |
| HIS | chainID: B, resSeq: 315, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-B-503 |
sad. -0.20 ruf. -0.84 dom. -0.12 bre. -0.09 |
HIS | chainID: B, resSeq: 108, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 439.0 Å3 d(Fe-oop): 0.040 Å |
| HIS | chainID: B, resSeq: 218, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-B-504 |
sad. +0.63 ruf. -1.03 dom. -0.05 bre. -0.08 |
HIS | chainID: B, resSeq: 301, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 399.0 Å3 d(Fe-oop): 0.021 Å |
| HIS | chainID: B, resSeq: 412, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-B-505 |
sad. +0.03 ruf. -1.34 dom. +0.15 bre. -0.09 |
HIS | chainID: B, resSeq: 290, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 466.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: B, resSeq: 332, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-C-501 |
sad. +0.44 ruf. -0.78 dom. +0.04 bre. -0.15 |
LYS | chainID: C, resSeq: 133, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 433.0 Å3 d(Fe-oop): 0.071 Å |
| SO4 | chainID: C, resSeq: 506, molecule: SULFATE ION |
|||
6v0a-C-502 |
sad. +0.64 ruf. -0.64 dom. -0.22 bre. -0.04 |
HIS | chainID: C, resSeq: 175, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 388.0 Å3 d(Fe-oop): 0.003 Å |
| HIS | chainID: C, resSeq: 315, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-C-503 |
sad. -0.25 ruf. -1.20 dom. -0.03 bre. -0.09 |
HIS | chainID: C, resSeq: 108, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 448.0 Å3 d(Fe-oop): 0.010 Å |
| HIS | chainID: C, resSeq: 218, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-C-504 |
sad. +0.63 ruf. -1.05 dom. -0.04 bre. -0.06 |
HIS | chainID: C, resSeq: 301, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 405.0 Å3 d(Fe-oop): 0.016 Å |
| HIS | chainID: C, resSeq: 412, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-C-505 |
sad. +0.07 ruf. -1.40 dom. +0.12 bre. +0.00 |
HIS | chainID: C, resSeq: 290, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 484.0 Å3 d(Fe-oop): 0.160 Å |
| HIS | chainID: C, resSeq: 332, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-D-501 |
sad. +0.58 ruf. -0.94 dom. +0.19 bre. -0.04 |
LYS | chainID: D, resSeq: 133, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 433.0 Å3 d(Fe-oop): 0.097 Å |
| SO4 | chainID: D, resSeq: 506, molecule: SULFATE ION |
|||
6v0a-D-502 |
sad. +0.56 ruf. -0.56 dom. -0.25 bre. -0.13 |
HIS | chainID: D, resSeq: 175, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 409.0 Å3 d(Fe-oop): 0.021 Å |
| HIS | chainID: D, resSeq: 315, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-D-503 |
sad. -0.33 ruf. -0.86 dom. -0.04 bre. -0.06 |
HIS | chainID: D, resSeq: 108, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 437.0 Å3 d(Fe-oop): 0.005 Å |
| HIS | chainID: D, resSeq: 218, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-D-505 |
sad. -0.06 ruf. -1.07 dom. +0.29 bre. +0.03 |
HIS | chainID: D, resSeq: 290, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 467.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: D, resSeq: 332, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-E-501 |
sad. +0.47 ruf. -0.58 dom. +0.10 bre. -0.20 |
LYS | chainID: E, resSeq: 133, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 435.0 Å3 d(Fe-oop): 0.050 Å |
| SO4 | chainID: E, resSeq: 506, molecule: SULFATE ION |
|||
6v0a-E-502 |
sad. +0.60 ruf. -0.57 dom. -0.27 bre. -0.14 |
HIS | chainID: E, resSeq: 175, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 386.0 Å3 d(Fe-oop): 0.040 Å |
| HIS | chainID: E, resSeq: 315, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-E-503 |
sad. -0.30 ruf. -1.17 dom. +0.04 bre. -0.04 |
HIS | chainID: E, resSeq: 108, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 435.0 Å3 d(Fe-oop): 0.088 Å |
| HIS | chainID: E, resSeq: 218, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-E-504 |
sad. +0.61 ruf. -1.21 dom. -0.09 bre. -0.08 |
HIS | chainID: E, resSeq: 301, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 386.0 Å3 d(Fe-oop): 0.079 Å |
| HIS | chainID: E, resSeq: 412, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-E-505 |
sad. +0.02 ruf. -0.87 dom. +0.12 bre. -0.05 |
HIS | chainID: E, resSeq: 290, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 476.0 Å3 d(Fe-oop): 0.064 Å |
| HIS | chainID: E, resSeq: 332, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-F-501 |
sad. +0.46 ruf. -0.79 dom. -0.02 bre. -0.25 |
LYS | chainID: F, resSeq: 133, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 426.0 Å3 d(Fe-oop): 0.051 Å |
| SO4 | chainID: F, resSeq: 506, molecule: SULFATE ION |
|||
6v0a-F-502 |
sad. +0.50 ruf. -0.64 dom. -0.29 bre. -0.23 |
HIS | chainID: F, resSeq: 175, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 420.0 Å3 d(Fe-oop): 0.035 Å |
| HIS | chainID: F, resSeq: 315, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-F-503 |
sad. -0.25 ruf. -1.17 dom. -0.02 bre. -0.20 |
HIS | chainID: F, resSeq: 108, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 429.0 Å3 d(Fe-oop): 0.068 Å |
| HIS | chainID: F, resSeq: 218, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-F-504 |
sad. +0.71 ruf. -0.92 dom. -0.04 bre. -0.13 |
HIS | chainID: F, resSeq: 301, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 379.0 Å3 d(Fe-oop): 0.148 Å |
| HIS | chainID: F, resSeq: 412, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
|||
6v0a-F-505 |
sad. +0.07 ruf. -1.21 dom. +0.12 bre. -0.03 |
HIS | chainID: F, resSeq: 290, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
oxidoreductase oligomeric count: 2 pocket vol.: 437.0 Å3 d(Fe-oop): 0.061 Å |
| HIS | chainID: F, resSeq: 332, molecule: Nitrite reductase (cytochrome; ammonia-forming) |
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