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Protein data
function: translocaseexperiment: ELECTRON MICROSCOPY
resolution: 3.29 Å
axial ligand #1: HIS
chainID: N,resSeq: 82,
Coordination distance[Å]: 1.991
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
Organism: Saccharomyces cerevisiae S288C
axial ligand #2: HIS
chainID: N,resSeq: 183,
Coordination distance[Å]: 1.991
molecule: same as ligand #1
List of other hemes in pdb:6t15
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
6t15-C-601 |
sad. +0.15 ruf. +0.17 dom. -0.09 bre. +0.06 |
HIS | chainID: C, resSeq: 82, molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2 |
translocase oligomeric count: 33 pocket vol.: 452.0 Å3 d(Fe-oop): 0.016 Å |
| HIS | chainID: C, resSeq: 183, molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2 |
|||
6t15-C-602 |
sad. -0.39 ruf. -0.48 dom. +0.36 bre. +0.08 |
HIS | chainID: C, resSeq: 96, molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2 |
translocase oligomeric count: 33 pocket vol.: 412.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: C, resSeq: 197, molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2 |
|||
6t15-D-401 |
sad. +0.02 ruf. -0.79 dom. -0.10 bre. -0.59 |
HIS | chainID: D, resSeq: 105, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1 |
translocase oligomeric count: 33 pocket vol.: 426.0 Å3 d(Fe-oop): 0.039 Å |
| MET | chainID: D, resSeq: 225, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1 |
|||
6t15-N-602 |
sad. -0.34 ruf. -0.53 dom. +0.34 bre. +0.07 |
HIS | chainID: N, resSeq: 96, molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2 |
translocase oligomeric count: 33 pocket vol.: 405.0 Å3 d(Fe-oop): 0.005 Å |
| HIS | chainID: N, resSeq: 197, molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2 |
|||
6t15-O-401 |
sad. +0.01 ruf. -0.73 dom. -0.09 bre. -0.60 |
HIS | chainID: O, resSeq: 105, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1 |
translocase oligomeric count: 33 pocket vol.: 415.0 Å3 d(Fe-oop): 0.033 Å |
| MET | chainID: O, resSeq: 225, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1 |
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6t15-a-602 |
sad. -0.77 ruf. -1.02 dom. +0.47 bre. -0.31 |
HIS | chainID: a, resSeq: 62, molecule: CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1 |
oxidoreductase oligomeric count: 33 pocket vol.: 579.0 Å3 d(Fe-oop): 0.110 Å |
| HIS | chainID: a, resSeq: 378, molecule: CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1 |
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6t15-a-603 |
sad. -0.70 ruf. +1.15 dom. +1.06 bre. -0.18 |
HIS | chainID: a, resSeq: 376, molecule: CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1 |
oxidoreductase oligomeric count: 33 pocket vol.: 706.0 Å3 d(Fe-oop): 0.114 Å |
| Not assigned. | ||||