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PyDISH No: 14122

PDB: 6t15,
chainID: N, resSeq: 601
heme type: B

distortion

Protein data

function: translocase
experiment: ELECTRON MICROSCOPY
resolution: 3.29 Å

axial ligand #1: HIS

chainID: N,
resSeq: 82,
Coordination distance[Å]: 1.991
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
Organism: Saccharomyces cerevisiae S288C

axial ligand #2: HIS

chainID: N,
resSeq: 183,
Coordination distance[Å]: 1.991
molecule: same as ligand #1

List of other hemes in pdb:6t15

ID of heme Distortion Axial ligands on heme Function & structure
6t15-C-601
sad. +0.15
ruf. +0.17
dom. -0.09
bre. +0.06
HIS chainID: C,
resSeq: 82,
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
translocase
oligomeric count: 33
pocket vol.: 452.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: C, resSeq: 183,
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
6t15-C-602
sad. -0.39
ruf. -0.48
dom. +0.36
bre. +0.08
HIS chainID: C,
resSeq: 96,
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
translocase
oligomeric count: 33
pocket vol.: 412.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: C, resSeq: 197,
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
6t15-D-401
sad. +0.02
ruf. -0.79
dom. -0.10
bre. -0.59
HIS chainID: D,
resSeq: 105,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1
translocase
oligomeric count: 33
pocket vol.: 426.0 Å3
d(Fe-oop): 0.039 Å
MET chainID: D, resSeq: 225,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1
6t15-N-602
sad. -0.34
ruf. -0.53
dom. +0.34
bre. +0.07
HIS chainID: N,
resSeq: 96,
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
translocase
oligomeric count: 33
pocket vol.: 405.0 Å3
d(Fe-oop): 0.005 Å
HIS chainID: N, resSeq: 197,
molecule: CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2
6t15-O-401
sad. +0.01
ruf. -0.73
dom. -0.09
bre. -0.60
HIS chainID: O,
resSeq: 105,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1
translocase
oligomeric count: 33
pocket vol.: 415.0 Å3
d(Fe-oop): 0.033 Å
MET chainID: O, resSeq: 225,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1
6t15-a-602
sad. -0.77
ruf. -1.02
dom. +0.47
bre. -0.31
HIS chainID: a,
resSeq: 62,
molecule: CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1
oxidoreductase
oligomeric count: 33
pocket vol.: 579.0 Å3
d(Fe-oop): 0.110 Å
HIS chainID: a, resSeq: 378,
molecule: CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1
6t15-a-603
sad. -0.70
ruf. +1.15
dom. +1.06
bre. -0.18
HIS chainID: a,
resSeq: 376,
molecule: CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1
oxidoreductase
oligomeric count: 33
pocket vol.: 706.0 Å3
d(Fe-oop): 0.114 Å
Not assigned.