Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 14109

PDB: 6t0b,
chainID: n, resSeq: 603
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.8 Å

axial ligand #1: HIS

chainID: n,
resSeq: 376,
Coordination distance[Å]: 1.994
molecule: Cytochrome c oxidase subunit 1
EC number: 1.9.3.1
Organism: Saccharomyces cerevisiae S288c

List of other hemes in pdb:6t0b

ID of heme	Distortion	Axial ligands on heme		Function & structure
6t0b-C-601	`sad. +0.17 ruf. -0.28 dom. -0.06 bre. +0.17`	HIS	chainID: C, resSeq: 82, molecule: Cytochrome b	translocase oligomeric count: 46 pocket vol.: 437.0 Å³ d(Fe-oop): 0.026 Å
6t0b-C-601	`sad. +0.17 ruf. -0.28 dom. -0.06 bre. +0.17`	HIS	chainID: C, resSeq: 183, molecule: Cytochrome b
6t0b-C-602	`sad. -0.47 ruf. -0.58 dom. +0.34 bre. +0.21`	HIS	chainID: C, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 46 pocket vol.: 409.0 Å³ d(Fe-oop): 0.051 Å
6t0b-C-602	`sad. -0.47 ruf. -0.58 dom. +0.34 bre. +0.21`	HIS	chainID: C, resSeq: 197, molecule: Cytochrome b
6t0b-D-401	`sad. +0.04 ruf. -0.90 dom. -0.14 bre. -0.48`	HIS	chainID: D, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 46 pocket vol.: 420.0 Å³ d(Fe-oop): 0.048 Å
6t0b-D-401	`sad. +0.04 ruf. -0.90 dom. -0.14 bre. -0.48`	MET	chainID: D, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
6t0b-N-601	`sad. +0.07 ruf. -0.22 dom. +0.01 bre. +0.13`	HIS	chainID: N, resSeq: 82, molecule: Cytochrome b	translocase oligomeric count: 46 pocket vol.: 408.0 Å³ d(Fe-oop): 0.018 Å
6t0b-N-601	`sad. +0.07 ruf. -0.22 dom. +0.01 bre. +0.13`	HIS	chainID: N, resSeq: 183, molecule: Cytochrome b
6t0b-N-602	`sad. -0.41 ruf. -0.54 dom. +0.31 bre. +0.19`	HIS	chainID: N, resSeq: 96, molecule: Cytochrome b	translocase oligomeric count: 46 pocket vol.: 387.0 Å³ d(Fe-oop): 0.012 Å
6t0b-N-602	`sad. -0.41 ruf. -0.54 dom. +0.31 bre. +0.19`	HIS	chainID: N, resSeq: 197, molecule: Cytochrome b
6t0b-O-401	`sad. +0.01 ruf. -0.81 dom. -0.09 bre. -0.51`	HIS	chainID: O, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	translocase oligomeric count: 46 pocket vol.: 415.0 Å³ d(Fe-oop): 0.031 Å
6t0b-O-401	`sad. +0.01 ruf. -0.81 dom. -0.09 bre. -0.51`	MET	chainID: O, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
6t0b-a-602	`sad. -0.60 ruf. +0.22 dom. +0.52 bre. -0.33`	HIS	chainID: a, resSeq: 62, molecule: Cytochrome c oxidase subunit 1	oxidoreductase oligomeric count: 46 pocket vol.: 644.0 Å³ d(Fe-oop): 0.059 Å
6t0b-a-602	`sad. -0.60 ruf. +0.22 dom. +0.52 bre. -0.33`	HIS	chainID: a, resSeq: 378, molecule: Cytochrome c oxidase subunit 1
6t0b-a-603	`sad. -0.35 ruf. +0.47 dom. +0.71 bre. -0.34`	HIS	chainID: a, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	oxidoreductase oligomeric count: 46 pocket vol.: 752.0 Å³ d(Fe-oop): 0.071 Å
6t0b-a-603	`sad. -0.35 ruf. +0.47 dom. +0.71 bre. -0.34`	Not assigned.
6t0b-n-602	`sad. -0.68 ruf. -0.56 dom. +0.38 bre. -0.32`	HIS	chainID: n, resSeq: 62, molecule: Cytochrome c oxidase subunit 1	oxidoreductase oligomeric count: 46 pocket vol.: 681.0 Å³ d(Fe-oop): 0.128 Å
6t0b-n-602	`sad. -0.68 ruf. -0.56 dom. +0.38 bre. -0.32`	HIS	chainID: n, resSeq: 378, molecule: Cytochrome c oxidase subunit 1