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PyDISH No: 14106

PDB: 6t0b,
chainID: a, resSeq: 602
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 2.8 Å

axial ligand #1: HIS

chainID: a,
resSeq: 62,
Coordination distance[Å]: 1.987
molecule: Cytochrome c oxidase subunit 1
EC number: 1.9.3.1
Organism: Saccharomyces cerevisiae S288c

axial ligand #2: HIS

chainID: a,
resSeq: 378,
Coordination distance[Å]: 1.997
molecule: same as ligand #1

List of other hemes in pdb:6t0b

ID of heme Distortion Axial ligands on heme Function & structure
6t0b-C-601
sad. +0.17
ruf. -0.28
dom. -0.06
bre. +0.17
HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 46
pocket vol.: 437.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
6t0b-C-602
sad. -0.47
ruf. -0.58
dom. +0.34
bre. +0.21
HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 46
pocket vol.: 409.0 Å3
d(Fe-oop): 0.051 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b
6t0b-D-401
sad. +0.04
ruf. -0.90
dom. -0.14
bre. -0.48
HIS chainID: D,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 46
pocket vol.: 420.0 Å3
d(Fe-oop): 0.048 Å
MET chainID: D, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial
6t0b-N-601
sad. +0.07
ruf. -0.22
dom. +0.01
bre. +0.13
HIS chainID: N,
resSeq: 82,
molecule: Cytochrome b
translocase
oligomeric count: 46
pocket vol.: 408.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: N, resSeq: 183,
molecule: Cytochrome b
6t0b-N-602
sad. -0.41
ruf. -0.54
dom. +0.31
bre. +0.19
HIS chainID: N,
resSeq: 96,
molecule: Cytochrome b
translocase
oligomeric count: 46
pocket vol.: 387.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: N, resSeq: 197,
molecule: Cytochrome b
6t0b-O-401
sad. +0.01
ruf. -0.81
dom. -0.09
bre. -0.51
HIS chainID: O,
resSeq: 105,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 46
pocket vol.: 415.0 Å3
d(Fe-oop): 0.031 Å
MET chainID: O, resSeq: 225,
molecule: Cytochrome c1, heme protein, mitochondrial
6t0b-a-603
sad. -0.35
ruf. +0.47
dom. +0.71
bre. -0.34
HIS chainID: a,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 46
pocket vol.: 752.0 Å3
d(Fe-oop): 0.071 Å
Not assigned.
6t0b-n-602
sad. -0.68
ruf. -0.56
dom. +0.38
bre. -0.32
HIS chainID: n,
resSeq: 62,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 46
pocket vol.: 681.0 Å3
d(Fe-oop): 0.128 Å
HIS chainID: n, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
6t0b-n-603
sad. -0.52
ruf. +0.37
dom. +0.61
bre. -0.37
HIS chainID: n,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 46
pocket vol.: 718.0 Å3
d(Fe-oop): 0.004 Å
Not assigned.