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PyDISH No: 14060

PDB: 6rqf,
chainID: A, resSeq: 302
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 3.58 Å

axial ligand #1: HIS

chainID: A,
resSeq: 100,
Coordination distance[Å]: 2.676
molecule: Cytochrome b6
Organism: Spinacia oleracea

axial ligand #2: HIS

chainID: A,
resSeq: 202,
Coordination distance[Å]: 2.737
molecule: same as ligand #1

List of other hemes in pdb:6rqf

ID of heme Distortion Axial ligands on heme Function & structure
6rqf-I-301
sad. -0.15
ruf. +0.34
dom. +0.07
bre. -0.01
HIS chainID: I,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 452.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: I, resSeq: 187,
molecule: Cytochrome b6
6rqf-I-302
sad. -1.10
ruf. -0.43
dom. +0.13
bre. +0.08
HIS chainID: I,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 436.0 Å3
d(Fe-oop): 0.113 Å
HIS chainID: I, resSeq: 202,
molecule: Cytochrome b6
6rqf-I-303
sad. +0.35
ruf. -0.67
dom. -0.49
bre. +0.05
Not assigned. unclassified
oligomeric count: 16
pocket vol.: 653.0 Å3
d(Fe-oop): 0.093 Å
Not assigned.
6rqf-K-301
sad. -0.13
ruf. +0.45
dom. -0.06
bre. +0.05
TYR chainID: K,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 16
pocket vol.: 406.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: K, resSeq: 25,
molecule: Cytochrome f
6rqf-A-301
sad. -0.12
ruf. -0.31
dom. -0.01
bre. -0.01
HIS chainID: A,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 448.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: A, resSeq: 187,
molecule: Cytochrome b6
6rqf-A-303
sad. +0.15
ruf. -0.70
dom. -0.76
bre. +0.08
Not assigned. unclassified
oligomeric count: 16
pocket vol.: 572.0 Å3
d(Fe-oop): 0.088 Å
Not assigned.
6rqf-C-301
sad. -0.27
ruf. -0.77
dom. +0.17
bre. +0.07
TYR chainID: C,
resSeq: 1,
molecule: Cytochrome f
electron transporter
oligomeric count: 16
pocket vol.: 383.0 Å3
d(Fe-oop): 0.031 Å
HIS chainID: C, resSeq: 25,
molecule: Cytochrome f