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PyDISH No: 13557

PDB: 6nin,
chainID: T, resSeq: 1001
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.6 Å

axial ligand #1: HIS

chainID: T,
resSeq: 40,
Coordination distance[Å]: 2.021
molecule: Cytochrome c1
Organism: Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

axial ligand #2: MET

chainID: T,
resSeq: 185,
Coordination distance[Å]: 2.163
molecule: same as ligand #1

List of other hemes in pdb:6nin

ID of heme	Distortion	Axial ligands on heme		Function & structure
6nin-A-1001	`sad. -0.40 ruf. -0.64 dom. +0.32 bre. -0.16`	HIS	chainID: A, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 408.0 Å³ d(Fe-oop): 0.005 Å
6nin-A-1001	`sad. -0.40 ruf. -0.64 dom. +0.32 bre. -0.16`	HIS	chainID: A, resSeq: 212, molecule: Cytochrome b
6nin-A-1002	`sad. -0.03 ruf. -0.17 dom. +0.10 bre. -0.22`	HIS	chainID: A, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 423.0 Å³ d(Fe-oop): 0.001 Å
6nin-A-1002	`sad. -0.03 ruf. -0.17 dom. +0.10 bre. -0.22`	HIS	chainID: A, resSeq: 198, molecule: Cytochrome b
6nin-B-1001	`sad. -0.06 ruf. -0.05 dom. -0.25 bre. -0.27`	HIS	chainID: B, resSeq: 40, molecule: Cytochrome c1	electron transporter oligomeric count: 6 pocket vol.: 451.0 Å³ d(Fe-oop): 0.014 Å
6nin-B-1001	`sad. -0.06 ruf. -0.05 dom. -0.25 bre. -0.27`	MET	chainID: B, resSeq: 185, molecule: Cytochrome c1
6nin-E-1001	`sad. -0.46 ruf. -0.40 dom. +0.41 bre. -0.13`	HIS	chainID: E, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 390.0 Å³ d(Fe-oop): 0.005 Å
6nin-E-1001	`sad. -0.46 ruf. -0.40 dom. +0.41 bre. -0.13`	HIS	chainID: E, resSeq: 212, molecule: Cytochrome b
6nin-E-1002	`sad. +0.04 ruf. -0.03 dom. +0.11 bre. -0.24`	HIS	chainID: E, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 395.0 Å³ d(Fe-oop): 0.002 Å
6nin-E-1002	`sad. +0.04 ruf. -0.03 dom. +0.11 bre. -0.24`	HIS	chainID: E, resSeq: 198, molecule: Cytochrome b
6nin-F-1001	`sad. +0.22 ruf. +0.07 dom. -0.08 bre. -0.26`	HIS	chainID: F, resSeq: 40, molecule: Cytochrome c1	electron transporter oligomeric count: 6 pocket vol.: 403.0 Å³ d(Fe-oop): 0.020 Å
6nin-F-1001	`sad. +0.22 ruf. +0.07 dom. -0.08 bre. -0.26`	MET	chainID: F, resSeq: 185, molecule: Cytochrome c1
6nin-K-1001	`sad. -0.42 ruf. -0.52 dom. +0.25 bre. -0.17`	HIS	chainID: K, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 434.0 Å³ d(Fe-oop): 0.001 Å
6nin-K-1001	`sad. -0.42 ruf. -0.52 dom. +0.25 bre. -0.17`	HIS	chainID: K, resSeq: 212, molecule: Cytochrome b
6nin-K-1002	`sad. -0.04 ruf. -0.33 dom. -0.02 bre. -0.20`	HIS	chainID: K, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 389.0 Å³ d(Fe-oop): 0.000 Å
6nin-K-1002	`sad. -0.04 ruf. -0.33 dom. -0.02 bre. -0.20`	HIS	chainID: K, resSeq: 198, molecule: Cytochrome b
6nin-L-1001	`sad. +0.13 ruf. +0.02 dom. -0.11 bre. -0.22`	HIS	chainID: L, resSeq: 40, molecule: Cytochrome c1	electron transporter oligomeric count: 6 pocket vol.: 415.0 Å³ d(Fe-oop): 0.036 Å
6nin-L-1001	`sad. +0.13 ruf. +0.02 dom. -0.11 bre. -0.22`	MET	chainID: L, resSeq: 185, molecule: Cytochrome c1
6nin-O-1001	`sad. -0.58 ruf. -0.58 dom. +0.26 bre. -0.16`	HIS	chainID: O, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 404.0 Å³ d(Fe-oop): 0.004 Å
6nin-O-1001	`sad. -0.58 ruf. -0.58 dom. +0.26 bre. -0.16`	HIS	chainID: O, resSeq: 212, molecule: Cytochrome b
6nin-O-1002	`sad. +0.01 ruf. -0.30 dom. +0.00 bre. -0.18`	HIS	chainID: O, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 407.0 Å³ d(Fe-oop): 0.002 Å
6nin-O-1002	`sad. +0.01 ruf. -0.30 dom. +0.00 bre. -0.18`	HIS	chainID: O, resSeq: 198, molecule: Cytochrome b
6nin-P-1001	`sad. +0.14 ruf. -0.02 dom. -0.07 bre. -0.27`	HIS	chainID: P, resSeq: 40, molecule: Cytochrome c1	electron transporter oligomeric count: 6 pocket vol.: 432.0 Å³ d(Fe-oop): 0.045 Å
6nin-P-1001	`sad. +0.14 ruf. -0.02 dom. -0.07 bre. -0.27`	MET	chainID: P, resSeq: 185, molecule: Cytochrome c1
6nin-S-1001	`sad. -0.52 ruf. -0.21 dom. +0.18 bre. -0.21`	HIS	chainID: S, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 426.0 Å³ d(Fe-oop): 0.006 Å
6nin-S-1001	`sad. -0.52 ruf. -0.21 dom. +0.18 bre. -0.21`	HIS	chainID: S, resSeq: 212, molecule: Cytochrome b
6nin-S-1002	`sad. +0.08 ruf. -0.48 dom. +0.02 bre. -0.14`	HIS	chainID: S, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 413.0 Å³ d(Fe-oop): 0.001 Å
6nin-S-1002	`sad. +0.08 ruf. -0.48 dom. +0.02 bre. -0.14`	HIS	chainID: S, resSeq: 198, molecule: Cytochrome b
6nin-W-1001	`sad. -0.60 ruf. -0.52 dom. +0.25 bre. -0.15`	HIS	chainID: W, resSeq: 111, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 409.0 Å³ d(Fe-oop): 0.003 Å
6nin-W-1001	`sad. -0.60 ruf. -0.52 dom. +0.25 bre. -0.15`	HIS	chainID: W, resSeq: 212, molecule: Cytochrome b
6nin-W-1002	`sad. +0.01 ruf. -0.23 dom. +0.03 bre. -0.20`	HIS	chainID: W, resSeq: 97, molecule: Cytochrome b	electron transporter oligomeric count: 6 pocket vol.: 392.0 Å³ d(Fe-oop): 0.000 Å
6nin-W-1002	`sad. +0.01 ruf. -0.23 dom. +0.03 bre. -0.20`	HIS	chainID: W, resSeq: 198, molecule: Cytochrome b
6nin-X-1001	`sad. +0.07 ruf. +0.04 dom. -0.16 bre. -0.23`	HIS	chainID: X, resSeq: 40, molecule: Cytochrome c1	electron transporter oligomeric count: 6 pocket vol.: 428.0 Å³ d(Fe-oop): 0.034 Å
6nin-X-1001	`sad. +0.07 ruf. +0.04 dom. -0.16 bre. -0.23`	MET	chainID: X, resSeq: 185, molecule: Cytochrome c1