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PyDISH No: 13538

PDB: 6nhh,
chainID: A, resSeq: 1002
heme type: B

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 111,
Coordination distance[Å]: 2.045
molecule: Cytochrome b
Organism: Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

axial ligand #2: HIS

chainID: A,
resSeq: 212,
Coordination distance[Å]: 2.016
molecule: same as ligand #1

List of other hemes in pdb:6nhh

ID of heme Distortion Axial ligands on heme Function & structure
6nhh-A-1001
sad. +0.02
ruf. -0.59
dom. -0.09
bre. -0.20
HIS chainID: A,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 408.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: A, resSeq: 198,
molecule: Cytochrome b
6nhh-B-302
sad. +0.03
ruf. -0.22
dom. -0.02
bre. -0.24
HIS chainID: B,
resSeq: 40,
molecule: Cytochrome c1
electron transporter
oligomeric count: 6
pocket vol.: 396.0 Å3
d(Fe-oop): 0.122 Å
MET chainID: B, resSeq: 185,
molecule: Cytochrome c1
6nhh-E-1001
sad. -0.09
ruf. -0.29
dom. -0.05
bre. -0.17
HIS chainID: E,
resSeq: 97,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 395.0 Å3
d(Fe-oop): 0.000 Å
HIS chainID: E, resSeq: 198,
molecule: Cytochrome b
6nhh-E-1002
sad. -0.46
ruf. -0.58
dom. +0.45
bre. -0.15
HIS chainID: E,
resSeq: 111,
molecule: Cytochrome b
electron transporter
oligomeric count: 6
pocket vol.: 391.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: E, resSeq: 212,
molecule: Cytochrome b
6nhh-F-302
sad. +0.03
ruf. +0.06
dom. -0.06
bre. -0.28
HIS chainID: F,
resSeq: 40,
molecule: Cytochrome c1
electron transporter
oligomeric count: 6
pocket vol.: 419.0 Å3
d(Fe-oop): 0.071 Å
MET chainID: F, resSeq: 185,
molecule: Cytochrome c1