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PyDISH No: 13354

PDB: 6m0q,
chainID: I, resSeq: 601
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.99 Å

axial ligand #1: HIS

chainID: I,
resSeq: 267,
Coordination distance[Å]: 2.005
molecule: Aerobic hydroxylamine oxidoreductase
Organism: Nitrosomonas europaea

axial ligand #2: HIS

chainID: I,
resSeq: 347,
Coordination distance[Å]: 1.962
molecule: same as ligand #1

List of other hemes in pdb:6m0q

ID of heme Distortion Axial ligands on heme Function & structure
6m0q-A-601
sad. +0.72
ruf. -0.29
dom. +0.28
bre. -0.11
HIS chainID: A,
resSeq: 267,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 413.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: A, resSeq: 347,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-A-602
sad. -0.18
ruf. -0.55
dom. -0.12
bre. -0.03
HIS chainID: A,
resSeq: 123,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 375.0 Å3
d(Fe-oop): 0.101 Å
HIS chainID: A, resSeq: 200,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-A-603
sad. +0.21
ruf. -0.43
dom. +0.07
bre. -0.16
HIS chainID: A,
resSeq: 107,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 409.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: A, resSeq: 184,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-A-604
sad. +0.47
ruf. -0.09
dom. +0.15
bre. -0.12
HIS chainID: A,
resSeq: 173,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 317.0 Å3
d(Fe-oop): 0.076 Å
HIS chainID: A, resSeq: 270,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-A-605
sad. +1.00
ruf. -0.69
dom. -0.04
bre. +0.17
HIS chainID: A,
resSeq: 338,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 375.0 Å3
d(Fe-oop): 0.050 Å
HIS chainID: A, resSeq: 483,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-A-606
sad. -0.29
ruf. -0.68
dom. -0.11
bre. +0.08
HIS chainID: A,
resSeq: 228,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 381.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: A, resSeq: 287,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-A-607
sad. +0.16
ruf. -0.57
dom. -0.05
bre. +0.03
HIS chainID: A,
resSeq: 303,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 370.0 Å3
d(Fe-oop): 0.080 Å
HIS chainID: A, resSeq: 388,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-601
sad. +0.67
ruf. -0.25
dom. +0.29
bre. -0.09
HIS chainID: C,
resSeq: 267,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 399.0 Å3
d(Fe-oop): 0.024 Å
HIS chainID: C, resSeq: 347,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-602
sad. -0.06
ruf. -0.70
dom. -0.14
bre. -0.03
HIS chainID: C,
resSeq: 123,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 364.0 Å3
d(Fe-oop): 0.117 Å
HIS chainID: C, resSeq: 200,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-603
sad. +0.15
ruf. -0.58
dom. +0.03
bre. -0.11
HIS chainID: C,
resSeq: 107,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 360.0 Å3
d(Fe-oop): 0.051 Å
HIS chainID: C, resSeq: 184,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-604
sad. +0.38
ruf. -0.07
dom. +0.12
bre. -0.03
HIS chainID: C,
resSeq: 173,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 311.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: C, resSeq: 270,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-605
sad. +1.00
ruf. -0.75
dom. -0.00
bre. +0.00
HIS chainID: C,
resSeq: 338,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 396.0 Å3
d(Fe-oop): 0.087 Å
HIS chainID: C, resSeq: 483,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-606
sad. -0.36
ruf. -0.73
dom. -0.08
bre. +0.02
HIS chainID: C,
resSeq: 228,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 395.0 Å3
d(Fe-oop): 0.065 Å
HIS chainID: C, resSeq: 287,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-C-607
sad. +0.14
ruf. -0.60
dom. +0.05
bre. +0.12
HIS chainID: C,
resSeq: 303,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 378.0 Å3
d(Fe-oop): 0.048 Å
HIS chainID: C, resSeq: 388,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-601
sad. +0.73
ruf. -0.23
dom. +0.23
bre. +0.07
HIS chainID: E,
resSeq: 267,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 403.0 Å3
d(Fe-oop): 0.038 Å
HIS chainID: E, resSeq: 347,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-602
sad. -0.15
ruf. -0.58
dom. -0.10
bre. -0.03
HIS chainID: E,
resSeq: 123,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 387.0 Å3
d(Fe-oop): 0.107 Å
HIS chainID: E, resSeq: 200,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-603
sad. +0.15
ruf. -0.54
dom. +0.06
bre. -0.07
HIS chainID: E,
resSeq: 107,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 382.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: E, resSeq: 184,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-604
sad. +0.50
ruf. -0.04
dom. +0.13
bre. -0.04
HIS chainID: E,
resSeq: 173,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 323.0 Å3
d(Fe-oop): 0.033 Å
HIS chainID: E, resSeq: 270,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-605
sad. +0.96
ruf. -0.65
dom. -0.04
bre. +0.05
HIS chainID: E,
resSeq: 338,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 383.0 Å3
d(Fe-oop): 0.070 Å
HIS chainID: E, resSeq: 483,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-606
sad. -0.32
ruf. -0.69
dom. -0.11
bre. +0.02
HIS chainID: E,
resSeq: 228,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 371.0 Å3
d(Fe-oop): 0.065 Å
HIS chainID: E, resSeq: 287,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-E-607
sad. +0.16
ruf. -0.63
dom. -0.00
bre. -0.07
HIS chainID: E,
resSeq: 303,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 359.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: E, resSeq: 388,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-601
sad. +0.54
ruf. -0.27
dom. +0.23
bre. -0.04
HIS chainID: G,
resSeq: 267,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 422.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: G, resSeq: 347,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-602
sad. -0.11
ruf. -0.59
dom. -0.12
bre. -0.09
HIS chainID: G,
resSeq: 123,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 372.0 Å3
d(Fe-oop): 0.128 Å
HIS chainID: G, resSeq: 200,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-603
sad. +0.19
ruf. -0.56
dom. +0.04
bre. -0.16
HIS chainID: G,
resSeq: 107,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 402.0 Å3
d(Fe-oop): 0.029 Å
HIS chainID: G, resSeq: 184,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-604
sad. +0.48
ruf. -0.01
dom. +0.18
bre. -0.08
HIS chainID: G,
resSeq: 173,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 330.0 Å3
d(Fe-oop): 0.076 Å
HIS chainID: G, resSeq: 270,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-605
sad. +0.98
ruf. -0.80
dom. +0.01
bre. +0.07
HIS chainID: G,
resSeq: 338,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 370.0 Å3
d(Fe-oop): 0.109 Å
HIS chainID: G, resSeq: 483,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-606
sad. -0.37
ruf. -0.73
dom. -0.11
bre. +0.02
HIS chainID: G,
resSeq: 228,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 390.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: G, resSeq: 287,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-G-607
sad. +0.16
ruf. -0.61
dom. +0.00
bre. -0.01
HIS chainID: G,
resSeq: 303,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 374.0 Å3
d(Fe-oop): 0.100 Å
HIS chainID: G, resSeq: 388,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-I-602
sad. -0.12
ruf. -0.59
dom. -0.13
bre. -0.03
HIS chainID: I,
resSeq: 123,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 339.0 Å3
d(Fe-oop): 0.091 Å
HIS chainID: I, resSeq: 200,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-I-603
sad. +0.20
ruf. -0.59
dom. +0.07
bre. -0.16
HIS chainID: I,
resSeq: 107,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 380.0 Å3
d(Fe-oop): 0.117 Å
HIS chainID: I, resSeq: 184,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-I-604
sad. +0.42
ruf. -0.07
dom. +0.14
bre. -0.09
HIS chainID: I,
resSeq: 173,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 325.0 Å3
d(Fe-oop): 0.076 Å
HIS chainID: I, resSeq: 270,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-I-605
sad. +0.95
ruf. -0.77
dom. -0.03
bre. +0.08
HIS chainID: I,
resSeq: 338,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 363.0 Å3
d(Fe-oop): 0.134 Å
HIS chainID: I, resSeq: 483,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-I-606
sad. -0.41
ruf. -0.69
dom. -0.14
bre. -0.03
HIS chainID: I,
resSeq: 228,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 380.0 Å3
d(Fe-oop): 0.127 Å
HIS chainID: I, resSeq: 287,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-I-607
sad. +0.18
ruf. -0.64
dom. -0.00
bre. +0.08
HIS chainID: I,
resSeq: 303,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 372.0 Å3
d(Fe-oop): 0.045 Å
HIS chainID: I, resSeq: 388,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-601
sad. +0.78
ruf. -0.25
dom. +0.22
bre. -0.03
HIS chainID: K,
resSeq: 267,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 408.0 Å3
d(Fe-oop): 0.029 Å
HIS chainID: K, resSeq: 347,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-602
sad. -0.17
ruf. -0.79
dom. -0.01
bre. -0.13
HIS chainID: K,
resSeq: 123,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 355.0 Å3
d(Fe-oop): 0.156 Å
HIS chainID: K, resSeq: 200,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-603
sad. +0.30
ruf. -0.64
dom. +0.05
bre. -0.09
HIS chainID: K,
resSeq: 107,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 369.0 Å3
d(Fe-oop): 0.083 Å
HIS chainID: K, resSeq: 184,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-604
sad. +0.41
ruf. +0.03
dom. +0.10
bre. -0.01
HIS chainID: K,
resSeq: 173,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 321.0 Å3
d(Fe-oop): 0.057 Å
HIS chainID: K, resSeq: 270,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-605
sad. +1.00
ruf. -0.69
dom. -0.04
bre. +0.09
HIS chainID: K,
resSeq: 338,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 373.0 Å3
d(Fe-oop): 0.083 Å
HIS chainID: K, resSeq: 483,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-606
sad. -0.29
ruf. -0.64
dom. -0.10
bre. -0.03
HIS chainID: K,
resSeq: 228,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 394.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: K, resSeq: 287,
molecule: Aerobic hydroxylamine oxidoreductase
6m0q-K-607
sad. +0.18
ruf. -0.61
dom. -0.01
bre. +0.00
HIS chainID: K,
resSeq: 303,
molecule: Aerobic hydroxylamine oxidoreductase
oxidoreductase
oligomeric count: 6
pocket vol.: 366.0 Å3
d(Fe-oop): 0.093 Å
HIS chainID: K, resSeq: 388,
molecule: Aerobic hydroxylamine oxidoreductase