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PyDISH No: 13272

PDB: 6lod,
chainID: A, resSeq: 303
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.2 Å

axial ligand #1: HIS

chainID: A,
resSeq: 137,
Coordination distance[Å]: 2.353
molecule: MULTIHEME_CYTC domain-containing protein
Organism: Roseiflexus castenholzii (strain DSM 13941 / HLO8)

axial ligand #2: HIS

chainID: A,
resSeq: 151,
Coordination distance[Å]: 2.052
molecule: same as ligand #1

List of other hemes in pdb:6lod

ID of heme Distortion Axial ligands on heme Function & structure
6lod-A-301
sad. +0.01
ruf. -0.07
dom. -0.02
bre. -0.17
HIS chainID: A,
resSeq: 66,
molecule: MULTIHEME_CYTC domain-containing protein
oxidoreductase
oligomeric count: 6
pocket vol.: 446.0 Å3
d(Fe-oop): 0.045 Å
HIS chainID: A, resSeq: 98,
molecule: MULTIHEME_CYTC domain-containing protein
6lod-A-302
sad. +0.01
ruf. +0.10
dom. +0.08
bre. -0.14
MET chainID: A,
resSeq: 168,
molecule: MULTIHEME_CYTC domain-containing protein
oxidoreductase
oligomeric count: 6
pocket vol.: 313.0 Å3
d(Fe-oop): 0.211 Å
HIS chainID: A, resSeq: 225,
molecule: MULTIHEME_CYTC domain-containing protein
6lod-A-304
sad. +0.14
ruf. -0.17
dom. +0.16
bre. -0.16
HIS chainID: A,
resSeq: 63,
molecule: MULTIHEME_CYTC domain-containing protein
oxidoreductase
oligomeric count: 6
pocket vol.: 378.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: A, resSeq: 77,
molecule: MULTIHEME_CYTC domain-containing protein
6lod-B-1101
sad. -0.13
ruf. -0.04
dom. +0.17
bre. -0.09
HIS chainID: A,
resSeq: 140,
molecule: MULTIHEME_CYTC domain-containing protein
oxidoreductase
oligomeric count: 6
pocket vol.: 381.0 Å3
d(Fe-oop): 0.029 Å
HIS chainID: A, resSeq: 175,
molecule: MULTIHEME_CYTC domain-containing protein
6lod-E-202
sad. +0.29
ruf. +0.02
dom. +0.00
bre. -0.17
HIS chainID: E,
resSeq: 117,
molecule: Cytochrome c domain-containing protein
electron transporter
oligomeric count: 6
pocket vol.: 351.0 Å3
d(Fe-oop): 0.038 Å
MET chainID: E, resSeq: 162,
molecule: Cytochrome c domain-containing protein