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PyDISH No: 13176

PDB: 6kmm,
chainID: F, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.93 Å
origomeric count: 2

axial ligand #1: HIS

chainID: F,
resSeq: 273,
Coordination distance[Å]: 2.19
molecule: Deferrochelatase/peroxidase EfeB
Organism: Bacillus subtilis

axial ligand #2: OXY

chainID: F,
resSeq: 402,
Coordination distance[Å]: 2.871
molecule: OXYGEN MOLECULE

List of other hemes in pdb:6kmm

ID of heme Distortion Axial ligands on heme Function & structure
6kmm-A-401
sad. +0.34
ruf. +0.27
dom. +0.08
bre. -0.11
HIS chainID: A,
resSeq: 273,
molecule: Deferrochelatase/peroxidase EfeB
oxidoreductase
oligomeric count: 2
pocket vol.: 434.0 Å3
d(Fe-oop): 0.086 Å
OXY chainID: A, resSeq: 402,
molecule: OXYGEN MOLECULE
6kmm-B-401
sad. +0.40
ruf. +0.38
dom. +0.05
bre. -0.05
HIS chainID: B,
resSeq: 273,
molecule: Deferrochelatase/peroxidase EfeB
oxidoreductase
oligomeric count: 2
pocket vol.: 441.0 Å3
d(Fe-oop): 0.073 Å
OXY chainID: B, resSeq: 402,
molecule: OXYGEN MOLECULE
6kmm-C-401
sad. +0.32
ruf. +0.32
dom. +0.05
bre. -0.06
HIS chainID: C,
resSeq: 273,
molecule: Deferrochelatase/peroxidase EfeB
oxidoreductase
oligomeric count: 2
pocket vol.: 424.0 Å3
d(Fe-oop): 0.062 Å
OXY chainID: C, resSeq: 402,
molecule: OXYGEN MOLECULE
6kmm-D-401
sad. +0.39
ruf. +0.44
dom. +0.09
bre. -0.12
HIS chainID: D,
resSeq: 273,
molecule: Deferrochelatase/peroxidase EfeB
oxidoreductase
oligomeric count: 2
pocket vol.: 427.0 Å3
d(Fe-oop): 0.058 Å
OXY chainID: D, resSeq: 402,
molecule: OXYGEN MOLECULE
6kmm-E-401
sad. +0.36
ruf. +0.39
dom. +0.09
bre. -0.12
HIS chainID: E,
resSeq: 273,
molecule: Deferrochelatase/peroxidase EfeB
oxidoreductase
oligomeric count: 2
pocket vol.: 434.0 Å3
d(Fe-oop): 0.103 Å
OXY chainID: E, resSeq: 402,
molecule: OXYGEN MOLECULE