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PyDISH No: 13068

PDB: 6k3o,
chainID: F, resSeq: 202
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.4 Å

axial ligand #1: MET

chainID: F,
resSeq: 52,
Coordination distance[Å]: 2.813
molecule: Bacterioferritin
EC number: 1.16.3.1
Organism: Streptomyces coelicolor

axial ligand #2: MET

chainID: E,
resSeq: 52,
Coordination distance[Å]: 2.896
molecule: Bacterioferritin
EC number: 1.16.3.1
Organism: Streptomyces coelicolor

List of other hemes in pdb:6k3o

ID of heme Distortion Axial ligands on heme Function & structure
6k3o-B-201
sad. -0.80
ruf. -0.32
dom. +0.26
bre. -0.06
MET chainID: A,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 606.0 Å3
d(Fe-oop): 0.055 Å
MET chainID: B, resSeq: 52,
molecule: Bacterioferritin
6k3o-C-202
sad. +0.31
ruf. +0.53
dom. +0.00
bre. +0.02
MET chainID: C,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 617.0 Å3
d(Fe-oop): 0.008 Å
MET chainID: D, resSeq: 52,
molecule: Bacterioferritin
6k3o-K-301
sad. +0.20
ruf. +0.39
dom. -0.56
bre. -0.03
MET chainID: K,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 626.0 Å3
d(Fe-oop): 0.090 Å
Not assigned.
6k3o-L-202
sad. +0.84
ruf. -0.12
dom. +0.06
bre. -0.07
MET chainID: L,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 599.0 Å3
d(Fe-oop): 0.097 Å
MET chainID: M, resSeq: 52,
molecule: Bacterioferritin
6k3o-N-201
sad. +0.59
ruf. +0.03
dom. -0.06
bre. -0.13
MET chainID: H,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 585.0 Å3
d(Fe-oop): 0.117 Å
MET chainID: N, resSeq: 52,
molecule: Bacterioferritin
6k3o-O-202
sad. -0.69
ruf. +0.68
dom. +0.45
bre. +0.10
MET chainID: O,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 563.0 Å3
d(Fe-oop): 0.077 Å
Not assigned.
6k3o-R-201
sad. +0.60
ruf. -0.10
dom. +0.01
bre. -0.13
MET chainID: Q,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 588.0 Å3
d(Fe-oop): 0.076 Å
MET chainID: R, resSeq: 52,
molecule: Bacterioferritin
6k3o-S-202
sad. -0.60
ruf. -0.16
dom. -0.03
bre. -0.11
MET chainID: I,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 565.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: S, resSeq: 52,
molecule: Bacterioferritin
6k3o-U-201
sad. -0.57
ruf. +0.10
dom. -0.17
bre. -0.14
MET chainID: T,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 590.0 Å3
d(Fe-oop): 0.107 Å
MET chainID: U, resSeq: 52,
molecule: Bacterioferritin
6k3o-W-201
sad. +0.65
ruf. -0.14
dom. +0.20
bre. -0.14
MET chainID: V,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 572.0 Å3
d(Fe-oop): 0.072 Å
MET chainID: W, resSeq: 52,
molecule: Bacterioferritin
6k3o-X-201
sad. -0.78
ruf. +0.08
dom. +0.20
bre. -0.13
MET chainID: G,
resSeq: 52,
molecule: Bacterioferritin
oxidoreductase
oligomeric count: 24
pocket vol.: 681.0 Å3
d(Fe-oop): 0.086 Å
MET chainID: X, resSeq: 52,
molecule: Bacterioferritin