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PyDISH No: 11960

PDB: 5y8a,
chainID: A, resSeq: 401
heme type: B

distortion

Protein data

function: unclassified
experiment: X-RAY DIFFRACTION
resolution: 2.001 Å

axial ligand #1: TYR

chainID: A,
resSeq: 87,
Coordination distance[Å]: 2.114
molecule: Putative hemin transport system, substrate-binding protein
Organism: Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)

List of other hemes in pdb:5y8a

ID of heme Distortion Axial ligands on heme Function & structure
5y8a-A-402
sad. +0.00
ruf. +0.04
dom. +0.25
bre. -0.16
Not assigned. unclassified
oligomeric count: 1
pocket vol.: 779.0 Å3
d(Fe-oop): 0.061 Å
Not assigned.
5y8a-B-401
sad. -0.17
ruf. +0.15
dom. -0.25
bre. -0.22
TYR chainID: B,
resSeq: 87,
molecule: Putative hemin transport system, substrate-binding protein
unclassified
oligomeric count: 1
pocket vol.: 790.0 Å3
d(Fe-oop): 0.273 Å
Not assigned.
5y8a-B-402
sad. -0.14
ruf. -0.06
dom. +0.43
bre. -0.17
Not assigned. unclassified
oligomeric count: 1
pocket vol.: 750.0 Å3
d(Fe-oop): 0.147 Å
Not assigned.