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PyDISH No: 11910

PDB: 5xte,
chainID: J, resSeq: 402
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 3.4 Å

axial ligand #1: HIS

chainID: J,
resSeq: 97,
Coordination distance[Å]: 2.484
molecule: Cytochrome b
Organism: Homo sapiens

axial ligand #2: HIS

chainID: J,
resSeq: 196,
Coordination distance[Å]: 2.54
molecule: same as ligand #1

List of other hemes in pdb:5xte

ID of heme Distortion Axial ligands on heme Function & structure
5xte-H-402
sad. -0.25
ruf. -1.28
dom. +0.60
bre. +0.08
HIS chainID: H,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 512.0 Å3
d(Fe-oop): 0.086 Å
Not assigned.
5xte-J-401
sad. -0.06
ruf. +0.10
dom. +0.12
bre. -0.21
HIS chainID: J,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 464.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: J, resSeq: 182,
molecule: Cytochrome b
5xte-U-402
sad. -0.14
ruf. -1.12
dom. +0.52
bre. -0.00
HIS chainID: U,
resSeq: 125,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 518.0 Å3
d(Fe-oop): 0.138 Å
MET chainID: U, resSeq: 244,
molecule: Cytochrome c1, heme protein, mitochondrial
5xte-V-401
sad. -0.17
ruf. +0.19
dom. -0.15
bre. -0.19
HIS chainID: V,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 451.0 Å3
d(Fe-oop): 0.091 Å
HIS chainID: V, resSeq: 182,
molecule: Cytochrome b
5xte-V-402
sad. -0.44
ruf. -0.80
dom. +0.25
bre. -0.14
HIS chainID: V,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 459.0 Å3
d(Fe-oop): 0.087 Å
HIS chainID: V, resSeq: 196,
molecule: Cytochrome b