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PyDISH No: 11407

PDB: 5okd,
chainID: D, resSeq: 501
heme type: C

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 3.1 Å

axial ligand #1: HIS

chainID: D,
resSeq: 41,
Coordination distance[Å]: 2.216
molecule: Cytochrome c1, heme protein, mitochondrial
Organism: Bos taurus

axial ligand #2: MET

chainID: D,
resSeq: 160,
Coordination distance[Å]: 2.374
molecule: same as ligand #1

List of other hemes in pdb:5okd

ID of heme Distortion Axial ligands on heme Function & structure
5okd-C-402
 sad. -0.01
ruf. -0.17
dom. -0.00
bre. -0.09
 HIS chainID: C,
resSeq: 83,
molecule: Cytochrome b		 electron transporter
oligomeric count: 10
pocket vol.: 414.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: C, resSeq: 182,
molecule: Cytochrome b
5okd-C-403
 sad. -0.34
ruf. -0.47
dom. +0.29
bre. -0.04
 HIS chainID: C,
resSeq: 97,
molecule: Cytochrome b		 electron transporter
oligomeric count: 10
pocket vol.: 405.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: C, resSeq: 196,
molecule: Cytochrome b