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PyDISH No: 11343

PDB: 5nmi,
chainID: Q, resSeq: 501
heme type: C

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 3.5 Å

axial ligand #1: HIS

chainID: Q,
resSeq: 41,
Coordination distance[Å]: 1.861
molecule: Cytochrome c1, heme protein, mitochondrial
Organism: Bos taurus

axial ligand #2: MET

chainID: Q,
resSeq: 160,
Coordination distance[Å]: 2.24
molecule: same as ligand #1

List of other hemes in pdb:5nmi

ID of heme Distortion Axial ligands on heme Function & structure
5nmi-C-501
sad. +0.02
ruf. -0.14
dom. -0.01
bre. -0.10
HIS chainID: C,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 388.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: C, resSeq: 182,
molecule: Cytochrome b
5nmi-C-502
sad. -0.38
ruf. -0.44
dom. +0.38
bre. -0.06
HIS chainID: C,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 393.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: C, resSeq: 196,
molecule: Cytochrome b
5nmi-D-501
sad. +0.00
ruf. -0.35
dom. -0.05
bre. -0.48
HIS chainID: D,
resSeq: 41,
molecule: Cytochrome c1, heme protein, mitochondrial
translocase
oligomeric count: 22
pocket vol.: 395.0 Å3
d(Fe-oop): 0.007 Å
MET chainID: D, resSeq: 160,
molecule: Cytochrome c1, heme protein, mitochondrial
5nmi-P-402
sad. +0.01
ruf. -0.13
dom. +0.01
bre. -0.04
HIS chainID: P,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 389.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: P, resSeq: 182,
molecule: Cytochrome b
5nmi-P-403
sad. -0.27
ruf. -1.02
dom. +0.26
bre. +0.07
HIS chainID: P,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 22
pocket vol.: 388.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: P, resSeq: 196,
molecule: Cytochrome b