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PyDISH No: 11289

PDB: 5mms,
chainID: D, resSeq: 1001
heme type: B

distortion

Protein data

function: lyase
experiment: X-RAY DIFFRACTION
resolution: 2.8 Å

axial ligand #1: CYS

chainID: D,
resSeq: 52,
Coordination distance[Å]: 2.489
molecule: Cystathionine beta-synthase
EC number: 4.2.1.22
Organism: Homo sapiens

axial ligand #2: HIS

chainID: D,
resSeq: 65,
Coordination distance[Å]: 2.158
molecule: same as ligand #1

List of other hemes in pdb:5mms

ID of heme Distortion Axial ligands on heme Function & structure
5mms-A-1001
 sad. -0.56
ruf. -0.46
dom. +0.03
bre. +0.14
 CYS chainID: A,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 2
pocket vol.: 443.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 65,
molecule: Cystathionine beta-synthase
5mms-B-1001
 sad. -0.58
ruf. -0.46
dom. +0.03
bre. +0.15
 CYS chainID: B,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 2
pocket vol.: 460.0 Å3
d(Fe-oop): 0.000 Å
HIS chainID: B, resSeq: 65,
molecule: Cystathionine beta-synthase
5mms-C-1001
 sad. -0.56
ruf. -0.49
dom. +0.04
bre. +0.17
 CYS chainID: C,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 2
pocket vol.: 440.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: C, resSeq: 65,
molecule: Cystathionine beta-synthase
5mms-E-502
 sad. -0.46
ruf. -0.47
dom. -0.03
bre. +0.01
 CYS chainID: E,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 2
pocket vol.: 470.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: E, resSeq: 65,
molecule: Cystathionine beta-synthase
5mms-F-502
 sad. -0.55
ruf. -0.44
dom. +0.08
bre. +0.15
 CYS chainID: F,
resSeq: 52,
molecule: Cystathionine beta-synthase		 lyase
oligomeric count: 2
pocket vol.: 439.0 Å3
d(Fe-oop): 0.062 Å
HIS chainID: F, resSeq: 65,
molecule: Cystathionine beta-synthase