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PyDISH No: 11220

PDB: 5lo9,
chainID: B, resSeq: 1004
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.75 Å

axial ligand #1: HIS

chainID: B,
resSeq: 406,
Coordination distance[Å]: 2.091
molecule: Cytochrome C
Organism: Marichromatium purpuratum 984

axial ligand #2: MET

chainID: B,
resSeq: 450,
Coordination distance[Å]: 2.298
molecule: same as ligand #1

List of other hemes in pdb:5lo9

ID of heme Distortion Axial ligands on heme Function & structure
5lo9-A-1001
sad. -0.00
ruf. -0.40
dom. +0.05
bre. -0.47
HIS chainID: A,
resSeq: 25,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 351.0 Å3
d(Fe-oop): 0.019 Å
MET chainID: A, resSeq: 65,
molecule: Cytochrome C
5lo9-A-1002
sad. +0.05
ruf. +0.29
dom. +0.07
bre. -0.45
HIS chainID: A,
resSeq: 125,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 346.0 Å3
d(Fe-oop): 0.025 Å
MET chainID: A, resSeq: 167,
molecule: Cytochrome C
5lo9-A-1003
sad. +0.09
ruf. -0.44
dom. -0.09
bre. -0.45
HIS chainID: A,
resSeq: 291,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 439.0 Å3
d(Fe-oop): 0.024 Å
CYS chainID: A, resSeq: 330,
molecule: Cytochrome C
5lo9-A-1004
sad. +0.20
ruf. -0.68
dom. -0.11
bre. -0.44
HIS chainID: A,
resSeq: 406,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 298.0 Å3
d(Fe-oop): 0.043 Å
MET chainID: A, resSeq: 450,
molecule: Cytochrome C
5lo9-B-1001
sad. +0.00
ruf. -0.67
dom. +0.08
bre. -0.55
HIS chainID: B,
resSeq: 25,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 351.0 Å3
d(Fe-oop): 0.024 Å
MET chainID: B, resSeq: 65,
molecule: Cytochrome C
5lo9-B-1002
sad. +0.05
ruf. +0.18
dom. -0.06
bre. -0.59
HIS chainID: B,
resSeq: 125,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 339.0 Å3
d(Fe-oop): 0.023 Å
MET chainID: B, resSeq: 167,
molecule: Cytochrome C
5lo9-B-1003
sad. +0.10
ruf. -0.61
dom. -0.13
bre. -0.48
HIS chainID: B,
resSeq: 291,
molecule: Cytochrome C
electron transporter
oligomeric count: 2
pocket vol.: 443.0 Å3
d(Fe-oop): 0.046 Å
CYS chainID: B, resSeq: 330,
molecule: Cytochrome C