Browser

PyDISH No: 11159

PDB: 5kyo,
chainID: E, resSeq: 501
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: CYS

chainID: E,
resSeq: 359,
Coordination distance[Å]: 2.478
molecule: CYP101J2
Organism: Sphingobium yanoikuyae

axial ligand #2: HOH

chainID: E,
resSeq: 629,
Coordination distance[Å]: 2.693
molecule: water

List of other hemes in pdb:5kyo

ID of heme Distortion Axial ligands on heme Function & structure
5kyo-A-501
sad. -0.40
ruf. -0.61
dom. -0.00
bre. -0.23
CYS chainID: A,
resSeq: 359,
molecule: CYP101J2
oxidoreductase
oligomeric count: 1
pocket vol.: 467.0 Å3
d(Fe-oop): 0.171 Å
HOH chainID: A, resSeq: 647,
molecule: water
5kyo-B-501
sad. -0.42
ruf. -0.56
dom. +0.06
bre. -0.24
CYS chainID: B,
resSeq: 359,
molecule: CYP101J2
oxidoreductase
oligomeric count: 1
pocket vol.: 433.0 Å3
d(Fe-oop): 0.207 Å
Not assigned.
5kyo-C-501
sad. -0.48
ruf. -0.63
dom. -0.06
bre. -0.21
CYS chainID: C,
resSeq: 359,
molecule: CYP101J2
oxidoreductase
oligomeric count: 1
pocket vol.: 429.0 Å3
d(Fe-oop): 0.205 Å
HOH chainID: C, resSeq: 734,
molecule: water
5kyo-D-501
sad. -0.39
ruf. -0.57
dom. +0.03
bre. -0.29
CYS chainID: D,
resSeq: 359,
molecule: CYP101J2
oxidoreductase
oligomeric count: 1
pocket vol.: 456.0 Å3
d(Fe-oop): 0.146 Å
HOH chainID: D, resSeq: 659,
molecule: water
5kyo-F-501
sad. -0.39
ruf. -0.49
dom. -0.03
bre. -0.26
CYS chainID: F,
resSeq: 359,
molecule: CYP101J2
oxidoreductase
oligomeric count: 1
pocket vol.: 455.0 Å3
d(Fe-oop): 0.201 Å
HOH chainID: F, resSeq: 615,
molecule: water