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PyDISH No: 11060

PDB: 5kaf,
chainID: V, resSeq: 201
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.00000997771 Å

axial ligand #1: HIS

chainID: V,
resSeq: 41,
Coordination distance[Å]: 2.166
molecule: Cytochrome c-550
Organism: Thermosynechococcus elongatus (strain BP-1)

axial ligand #2: HIS

chainID: V,
resSeq: 92,
Coordination distance[Å]: 2.181
molecule: same as ligand #1

List of other hemes in pdb:5kaf

ID of heme Distortion Axial ligands on heme Function & structure
5kaf-E-101
sad. +0.63
ruf. -0.01
dom. -0.04
bre. -0.16
HIS chainID: E,
resSeq: 23,
molecule: Cytochrome b559 subunit alpha
electron transporter
oligomeric count: 40
pocket vol.: 484.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: F, resSeq: 24,
molecule: Cytochrome b559 subunit beta
5kaf-e-101
sad. +0.73
ruf. -0.02
dom. -0.12
bre. -0.18
HIS chainID: e,
resSeq: 23,
molecule: Cytochrome b559 subunit alpha
electron transporter
oligomeric count: 40
pocket vol.: 515.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: f, resSeq: 24,
molecule: Cytochrome b559 subunit beta
5kaf-v-201
sad. +0.44
ruf. -0.32
dom. +0.06
bre. -0.22
HIS chainID: v,
resSeq: 41,
molecule: Cytochrome c-550
electron transporter
oligomeric count: 40
pocket vol.: 460.0 Å3
d(Fe-oop): 0.074 Å
HIS chainID: v, resSeq: 92,
molecule: Cytochrome c-550