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PyDISH No: 10866

PDB: 5gup,
chainID: Ak, resSeq: 601
heme type: A

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 4.0 Å

axial ligand #1: HIS

chainID: Ak,
resSeq: 61,
Coordination distance[Å]: 1.836
molecule: Cytochrome c oxidase subunit 1
Organism: Sus scrofa

axial ligand #2: HIS

chainID: Ak,
resSeq: 378,
Coordination distance[Å]: 1.899
molecule: same as ligand #1

List of other hemes in pdb:5gup

ID of heme	Distortion	Axial ligands on heme		Function & structure
5gup-w-401	`sad. -2.25 ruf. -0.00 dom. +0.34 bre. +1.36`	HIS	chainID: w, resSeq: 83, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 542.0 Å³ d(Fe-oop): 0.257 Å
5gup-w-401	`sad. -2.25 ruf. -0.00 dom. +0.34 bre. +1.36`	HIS	chainID: w, resSeq: 182, molecule: Cytochrome b
5gup-w-402	`sad. -2.26 ruf. +0.02 dom. +0.36 bre. +1.44`	HIS	chainID: w, resSeq: 97, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 435.0 Å³ d(Fe-oop): 0.268 Å
5gup-w-402	`sad. -2.26 ruf. +0.02 dom. +0.36 bre. +1.44`	HIS	chainID: w, resSeq: 196, molecule: Cytochrome b
5gup-x-401	`sad. -1.86 ruf. -1.06 dom. -0.30 bre. +0.61`	HIS	chainID: x, resSeq: 126, molecule: Cytochrome c1, heme protein, mitochondrial	electron transporter oligomeric count: 80 pocket vol.: 526.0 Å³ d(Fe-oop): 0.005 Å
5gup-x-401	`sad. -1.86 ruf. -1.06 dom. -0.30 bre. +0.61`	MET	chainID: x, resSeq: 245, molecule: Cytochrome c1, heme protein, mitochondrial
5gup-7-403	`sad. +2.25 ruf. -0.10 dom. -0.33 bre. +1.41`	HIS	chainID: 7, resSeq: 83, molecule: Cytochrome b	oxidoreductase oligomeric count: 80 pocket vol.: 432.0 Å³ d(Fe-oop): 0.260 Å
5gup-7-403	`sad. +2.25 ruf. -0.10 dom. -0.33 bre. +1.41`	HIS	chainID: 7, resSeq: 182, molecule: Cytochrome b
5gup-7-404	`sad. -2.28 ruf. +0.06 dom. +0.35 bre. +1.43`	Not assigned.		unclassified oligomeric count: 80 pocket vol.: 537.0 Å³ d(Fe-oop): 0.263 Å
5gup-7-404	`sad. -2.28 ruf. +0.06 dom. +0.35 bre. +1.43`	Not assigned.
5gup-8-402	`sad. -0.08 ruf. +0.81 dom. -0.42 bre. -0.07`	HIS	chainID: 8, resSeq: 126, molecule: Cytochrome c1, heme protein, mitochondrial	electron transporter oligomeric count: 80 pocket vol.: 478.0 Å³ d(Fe-oop): 0.148 Å
5gup-8-402	`sad. -0.08 ruf. +0.81 dom. -0.42 bre. -0.07`	MET	chainID: 8, resSeq: 245, molecule: Cytochrome c1, heme protein, mitochondrial
5gup-Ak-602	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	HIS	chainID: Ak, resSeq: 376, molecule: Cytochrome c oxidase subunit 1	electron transporter oligomeric count: 80 pocket vol.: 746.0 Å³ d(Fe-oop): 0.026 Å
5gup-Ak-602	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	Not assigned.