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PyDISH No: 10863

PDB: 5gup,
chainID: 7, resSeq: 403
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 4.0 Å

axial ligand #1: HIS

chainID: 7,
resSeq: 83,
Coordination distance[Å]: 2.529
molecule: Cytochrome b
Organism: Sus scrofa

axial ligand #2: HIS

chainID: 7,
resSeq: 182,
Coordination distance[Å]: 2.83
molecule: same as ligand #1

List of other hemes in pdb:5gup

ID of heme Distortion Axial ligands on heme Function & structure
5gup-w-401
sad. -2.25
ruf. -0.00
dom. +0.34
bre. +1.36
HIS chainID: w,
resSeq: 83,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 542.0 Å3
d(Fe-oop): 0.257 Å
HIS chainID: w, resSeq: 182,
molecule: Cytochrome b
5gup-w-402
sad. -2.26
ruf. +0.02
dom. +0.36
bre. +1.44
HIS chainID: w,
resSeq: 97,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 80
pocket vol.: 435.0 Å3
d(Fe-oop): 0.268 Å
HIS chainID: w, resSeq: 196,
molecule: Cytochrome b
5gup-x-401
sad. -1.86
ruf. -1.06
dom. -0.30
bre. +0.61
HIS chainID: x,
resSeq: 126,
molecule: Cytochrome c1, heme protein, mitochondrial
electron transporter
oligomeric count: 80
pocket vol.: 526.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: x, resSeq: 245,
molecule: Cytochrome c1, heme protein, mitochondrial
5gup-7-404
sad. -2.28
ruf. +0.06
dom. +0.35
bre. +1.43
Not assigned. unclassified
oligomeric count: 80
pocket vol.: 537.0 Å3
d(Fe-oop): 0.263 Å
Not assigned.
5gup-8-402
sad. -0.08
ruf. +0.81
dom. -0.42
bre. -0.07
HIS chainID: 8,
resSeq: 126,
molecule: Cytochrome c1, heme protein, mitochondrial
electron transporter
oligomeric count: 80
pocket vol.: 478.0 Å3
d(Fe-oop): 0.148 Å
MET chainID: 8, resSeq: 245,
molecule: Cytochrome c1, heme protein, mitochondrial
5gup-Ak-601
sad. -0.59
ruf. -0.27
dom. +0.29
bre. +0.04
HIS chainID: Ak,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
electron transporter
oligomeric count: 80
pocket vol.: 637.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: Ak, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
5gup-Ak-602
sad. -0.27
ruf. -0.21
dom. +0.31
bre. -0.11
HIS chainID: Ak,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
electron transporter
oligomeric count: 80
pocket vol.: 746.0 Å3
d(Fe-oop): 0.026 Å
Not assigned.