Browser

PyDISH No: 10601

PDB: 5d8x,
chainID: A, resSeq: 201
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.5 Å

axial ligand #1: MET

chainID: A,
resSeq: 52,
Coordination distance[Å]: 2.333
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

axial ligand #2: MET

chainID: B,
resSeq: 52,
Coordination distance[Å]: 2.342
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

List of other hemes in pdb:5d8x

ID of heme Distortion Axial ligands on heme Function & structure
5d8x-C-202
sad. -0.22
ruf. -0.00
dom. -0.03
bre. -0.14
MET chainID: C,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 510.0 Å3
d(Fe-oop): 0.009 Å
MET chainID: D, resSeq: 52,
molecule: Ferroxidase
5d8x-E-201
sad. -0.25
ruf. +0.00
dom. -0.02
bre. -0.15
MET chainID: E,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 502.0 Å3
d(Fe-oop): 0.021 Å
MET chainID: F, resSeq: 52,
molecule: Ferroxidase
5d8x-G-201
sad. -0.26
ruf. +0.03
dom. +0.01
bre. -0.13
MET chainID: G,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 513.0 Å3
d(Fe-oop): 0.029 Å
MET chainID: H, resSeq: 52,
molecule: Ferroxidase
5d8x-I-203
sad. -0.17
ruf. +0.04
dom. -0.03
bre. -0.18
MET chainID: I,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 516.0 Å3
d(Fe-oop): 0.007 Å
MET chainID: J, resSeq: 52,
molecule: Ferroxidase
5d8x-K-201
sad. -0.19
ruf. -0.03
dom. -0.00
bre. -0.17
MET chainID: K,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 494.0 Å3
d(Fe-oop): 0.002 Å
MET chainID: L, resSeq: 52,
molecule: Ferroxidase
5d8x-M-201
sad. -0.23
ruf. -0.01
dom. +0.01
bre. -0.14
MET chainID: M,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 489.0 Å3
d(Fe-oop): 0.008 Å
MET chainID: N, resSeq: 52,
molecule: Ferroxidase
5d8x-O-202
sad. -0.25
ruf. -0.01
dom. +0.01
bre. -0.19
MET chainID: O,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 491.0 Å3
d(Fe-oop): 0.019 Å
MET chainID: P, resSeq: 52,
molecule: Ferroxidase
5d8x-Q-201
sad. -0.25
ruf. +0.04
dom. +0.01
bre. -0.16
MET chainID: Q,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 512.0 Å3
d(Fe-oop): 0.010 Å
MET chainID: R, resSeq: 52,
molecule: Ferroxidase
5d8x-S-204
sad. -0.18
ruf. -0.04
dom. -0.01
bre. -0.16
MET chainID: S,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 527.0 Å3
d(Fe-oop): 0.008 Å
MET chainID: T, resSeq: 52,
molecule: Ferroxidase
5d8x-U-201
sad. -0.27
ruf. +0.11
dom. +0.05
bre. -0.11
MET chainID: U,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 520.0 Å3
d(Fe-oop): 0.015 Å
MET chainID: V, resSeq: 52,
molecule: Ferroxidase
5d8x-W-201
sad. -0.23
ruf. -0.02
dom. +0.01
bre. -0.23
MET chainID: W,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 493.0 Å3
d(Fe-oop): 0.019 Å
MET chainID: X, resSeq: 52,
molecule: Ferroxidase