Browser

PyDISH No: 10597

PDB: 5d8s,
chainID: E, resSeq: 201
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.55 Å

axial ligand #1: MET

chainID: E,
resSeq: 52,
Coordination distance[Å]: 2.457
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

axial ligand #2: MET

chainID: G,
resSeq: 52,
Coordination distance[Å]: 2.428
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

List of other hemes in pdb:5d8s

ID of heme Distortion Axial ligands on heme Function & structure
5d8s-A-202
sad. -0.39
ruf. +0.19
dom. +0.09
bre. -0.19
MET chainID: A,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 513.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: B, resSeq: 52,
molecule: Ferroxidase
5d8s-C-202
sad. -0.41
ruf. -0.08
dom. -0.00
bre. -0.20
MET chainID: C,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 494.0 Å3
d(Fe-oop): 0.063 Å
MET chainID: H, resSeq: 52,
molecule: Ferroxidase
5d8s-D-201
sad. -0.30
ruf. -0.02
dom. -0.07
bre. -0.08
MET chainID: D,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 509.0 Å3
d(Fe-oop): 0.099 Å
MET chainID: J, resSeq: 52,
molecule: Ferroxidase
5d8s-F-201
sad. -0.33
ruf. +0.09
dom. +0.04
bre. -0.23
MET chainID: F,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 490.0 Å3
d(Fe-oop): 0.090 Å
MET chainID: K, resSeq: 52,
molecule: Ferroxidase
5d8s-I-201
sad. +0.13
ruf. +0.25
dom. +0.32
bre. -0.28
MET chainID: I,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 752.0 Å3
d(Fe-oop): 0.047 Å
Not assigned.
5d8s-L-201
sad. -0.30
ruf. +0.24
dom. +0.18
bre. -0.19
MET chainID: L,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 743.0 Å3
d(Fe-oop): 0.035 Å
Not assigned.