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PyDISH No: 10592

PDB: 5d8r,
chainID: K, resSeq: 201
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.5 Å
origomeric count: 24

axial ligand #1: MET

chainID: F,
resSeq: 52,
Coordination distance[Å]: 2.373
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

axial ligand #2: MET

chainID: K,
resSeq: 52,
Coordination distance[Å]: 2.522
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

List of other hemes in pdb:5d8r

ID of heme Distortion Axial ligands on heme Function & structure
5d8r-A-201
 sad. -0.24
ruf. -0.15
dom. +0.07
bre. -0.26
 MET chainID: A,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 786.0 Å3
d(Fe-oop): 0.009 Å
Not assigned.
5d8r-B-201
 sad. -0.24
ruf. -0.20
dom. -0.15
bre. -0.30
 MET chainID: B,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 515.0 Å3
d(Fe-oop): 0.124 Å
MET chainID: E, resSeq: 52,
molecule: Ferroxidase
5d8r-D-201
 sad. -0.22
ruf. +0.11
dom. +0.09
bre. -0.28
 MET chainID: D,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 747.0 Å3
d(Fe-oop): 0.042 Å
Not assigned.
5d8r-I-201
 sad. -0.18
ruf. +0.15
dom. +0.03
bre. -0.31
 MET chainID: C,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 509.0 Å3
d(Fe-oop): 0.140 Å
MET chainID: I, resSeq: 52,
molecule: Ferroxidase
5d8r-J-201
 sad. -0.41
ruf. -0.19
dom. -0.04
bre. -0.27
 MET chainID: H,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 497.0 Å3
d(Fe-oop): 0.070 Å
MET chainID: J, resSeq: 52,
molecule: Ferroxidase
5d8r-L-201
 sad. -0.19
ruf. +0.32
dom. +0.15
bre. -0.23
 MET chainID: L,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 771.0 Å3
d(Fe-oop): 0.037 Å
Not assigned.