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PyDISH No: 10580

PDB: 5d8q,
chainID: B, resSeq: 202
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.2 Å

axial ligand #1: MET

chainID: A,
resSeq: 52,
Coordination distance[Å]: 2.417
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

axial ligand #2: MET

chainID: B,
resSeq: 52,
Coordination distance[Å]: 2.38
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

List of other hemes in pdb:5d8q

ID of heme Distortion Axial ligands on heme Function & structure
5d8q-C-202
sad. -0.34
ruf. +0.06
dom. -0.20
bre. -0.41
MET chainID: C,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 498.0 Å3
d(Fe-oop): 0.004 Å
MET chainID: H, resSeq: 52,
molecule: Ferroxidase
5d8q-E-201
sad. -0.26
ruf. +0.04
dom. -0.06
bre. -0.40
MET chainID: E,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 516.0 Å3
d(Fe-oop): 0.128 Å
MET chainID: G, resSeq: 52,
molecule: Ferroxidase
5d8q-I-201
sad. -0.14
ruf. -0.24
dom. +0.11
bre. -0.32
MET chainID: I,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 697.0 Å3
d(Fe-oop): 0.351 Å
Not assigned.
5d8q-J-201
sad. -0.27
ruf. -0.24
dom. -0.03
bre. -0.45
MET chainID: D,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 531.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: J, resSeq: 52,
molecule: Ferroxidase
5d8q-K-201
sad. -0.27
ruf. -0.03
dom. -0.13
bre. -0.49
MET chainID: F,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 531.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: K, resSeq: 52,
molecule: Ferroxidase
5d8q-L-201
sad. -0.05
ruf. -0.09
dom. +0.18
bre. -0.24
MET chainID: L,
resSeq: 52,
molecule: Ferroxidase
oxidoreductase
oligomeric count: 24
pocket vol.: 790.0 Å3
d(Fe-oop): 0.021 Å
Not assigned.