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PyDISH No: 10574

PDB: 5d8p,
chainID: C, resSeq: 206
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.35 Å
origomeric count: 24

axial ligand #1: MET

chainID: C,
resSeq: 52,
Coordination distance[Å]: 2.33
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

axial ligand #2: MET

chainID: I,
resSeq: 52,
Coordination distance[Å]: 2.355
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

List of other hemes in pdb:5d8p

ID of heme Distortion Axial ligands on heme Function & structure
5d8p-A-208
 sad. -0.25
ruf. +0.07
dom. +0.11
bre. -0.30
 MET chainID: A,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 748.0 Å3
d(Fe-oop): 0.020 Å
Not assigned.
5d8p-D-210
 sad. -0.33
ruf. -0.02
dom. +0.09
bre. -0.23
 MET chainID: D,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 757.0 Å3
d(Fe-oop): 0.049 Å
Not assigned.
5d8p-E-206
 sad. -0.21
ruf. -0.01
dom. -0.02
bre. -0.23
 MET chainID: B,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 535.0 Å3
d(Fe-oop): 0.042 Å
MET chainID: E, resSeq: 52,
molecule: Ferroxidase
5d8p-J-207
 sad. -0.24
ruf. +0.06
dom. +0.13
bre. -0.27
 MET chainID: H,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 518.0 Å3
d(Fe-oop): 0.067 Å
MET chainID: J, resSeq: 52,
molecule: Ferroxidase
5d8p-K-206
 sad. -0.22
ruf. +0.04
dom. +0.03
bre. -0.24
 MET chainID: F,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 483.0 Å3
d(Fe-oop): 0.009 Å
MET chainID: K, resSeq: 52,
molecule: Ferroxidase
5d8p-L-207
 sad. -0.21
ruf. +0.23
dom. +0.23
bre. -0.24
 MET chainID: L,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 794.0 Å3
d(Fe-oop): 0.003 Å
Not assigned.