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PyDISH No: 10567

PDB: 5d8o,
chainID: B, resSeq: 203
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.9 Å
origomeric count: 24

axial ligand #1: MET

chainID: B,
resSeq: 52,
Coordination distance[Å]: 2.379
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

axial ligand #2: MET

chainID: E,
resSeq: 52,
Coordination distance[Å]: 2.334
molecule: Ferroxidase
EC number: 1.16.3.1
Organism: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)

List of other hemes in pdb:5d8o

ID of heme Distortion Axial ligands on heme Function & structure
5d8o-A-205
 sad. -0.21
ruf. +0.03
dom. +0.04
bre. -0.16
 MET chainID: A,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 735.0 Å3
d(Fe-oop): 0.004 Å
Not assigned.
5d8o-D-203
 sad. -0.31
ruf. +0.21
dom. +0.20
bre. -0.22
 MET chainID: D,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 751.0 Å3
d(Fe-oop): 0.013 Å
Not assigned.
5d8o-F-203
 sad. -0.21
ruf. -0.05
dom. +0.00
bre. -0.19
 MET chainID: F,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 500.0 Å3
d(Fe-oop): 0.026 Å
MET chainID: K, resSeq: 52,
molecule: Ferroxidase
5d8o-I-202
 sad. -0.20
ruf. -0.06
dom. +0.05
bre. -0.21
 MET chainID: C,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 530.0 Å3
d(Fe-oop): 0.011 Å
MET chainID: I, resSeq: 52,
molecule: Ferroxidase
5d8o-J-204
 sad. -0.24
ruf. -0.01
dom. -0.00
bre. -0.22
 MET chainID: H,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 501.0 Å3
d(Fe-oop): 0.050 Å
MET chainID: J, resSeq: 52,
molecule: Ferroxidase
5d8o-L-203
 sad. -0.28
ruf. +0.31
dom. +0.06
bre. -0.19
 MET chainID: L,
resSeq: 52,
molecule: Ferroxidase		 oxidoreductase
oligomeric count: 24
pocket vol.: 761.0 Å3
d(Fe-oop): 0.071 Å
Not assigned.