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PyDISH No: 10425

PDB: 5b5e,
chainID: v, resSeq: 203
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.87 Å

axial ligand #1: HIS

chainID: v,
resSeq: 41,
Coordination distance[Å]: 2.015
molecule: Cytochrome c-550
Organism: Thermosynechococcus vulcanus

axial ligand #2: HIS

chainID: v,
resSeq: 92,
Coordination distance[Å]: 2.013
molecule: same as ligand #1

List of other hemes in pdb:5b5e

ID of heme Distortion Axial ligands on heme Function & structure
5b5e-E-105
sad. +1.03
ruf. -0.26
dom. -0.13
bre. -0.24
HIS chainID: E,
resSeq: 23,
molecule: Cytochrome b559 subunit alpha
electron transporter
oligomeric count: 38
pocket vol.: 441.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: F, resSeq: 24,
molecule: Cytochrome b559 subunit beta
5b5e-V-203
sad. +0.43
ruf. -0.48
dom. +0.07
bre. -0.20
HIS chainID: V,
resSeq: 41,
molecule: Cytochrome c-550
electron transporter
oligomeric count: 38
pocket vol.: 424.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: V, resSeq: 92,
molecule: Cytochrome c-550
5b5e-e-105
sad. +0.96
ruf. -0.28
dom. -0.02
bre. -0.21
HIS chainID: e,
resSeq: 23,
molecule: Cytochrome b559 subunit alpha
electron transporter
oligomeric count: 38
pocket vol.: 497.0 Å3
d(Fe-oop): 0.010 Å
HIS chainID: f, resSeq: 24,
molecule: Cytochrome b559 subunit beta