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PyDISH No: 10399

PDB: 5b1b,
chainID: N, resSeq: 601
heme type: A

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 1.6 Å

axial ligand #1: HIS

chainID: N,
resSeq: 61,
Coordination distance[Å]: 2.003
molecule: Cytochrome c oxidase subunit 1
EC number: 7.1.1.9
Organism: Bos taurus

axial ligand #2: HIS

chainID: N,
resSeq: 378,
Coordination distance[Å]: 1.988
molecule: same as ligand #1

List of other hemes in pdb:5b1b

ID of heme Distortion Axial ligands on heme Function & structure
5b1b-A-601
sad. -0.63
ruf. +0.27
dom. +0.21
bre. -0.07
HIS chainID: A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 565.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
5b1b-A-602
sad. -0.39
ruf. -0.10
dom. +0.53
bre. -0.18
HIS chainID: A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 678.0 Å3
d(Fe-oop): 0.270 Å
Not assigned.
5b1b-N-602
sad. -0.39
ruf. -0.09
dom. +0.51
bre. -0.17
HIS chainID: N,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
translocase
oligomeric count: 13
pocket vol.: 671.0 Å3
d(Fe-oop): 0.289 Å
Not assigned.