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PyDISH No: 10120

PDB: 4wjy,
chainID: A, resSeq: 501
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.15 Å

axial ligand #1: LYS

chainID: A,
resSeq: 126,
Coordination distance[Å]: 2.038
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Escherichia coli K-12

axial ligand #2: HOH

chainID: A,
resSeq: 898,
Coordination distance[Å]: 2.445
molecule: water

List of other hemes in pdb:4wjy

ID of heme	Distortion	Axial ligands on heme		Function & structure
4wjy-A-502	`sad. +0.45 ruf. -0.65 dom. -0.15 bre. +0.00`	HIS	chainID: A, resSeq: 164, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 371.0 Å³ d(Fe-oop): 0.044 Å
4wjy-A-502	`sad. +0.45 ruf. -0.65 dom. -0.15 bre. +0.00`	HIS	chainID: A, resSeq: 301, molecule: Cytochrome c-552
4wjy-A-503	`sad. -0.36 ruf. -0.78 dom. +0.07 bre. -0.05`	HIS	chainID: A, resSeq: 94, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 416.0 Å³ d(Fe-oop): 0.023 Å
4wjy-A-503	`sad. -0.36 ruf. -0.78 dom. +0.07 bre. -0.05`	HIS	chainID: A, resSeq: 213, molecule: Cytochrome c-552
4wjy-A-504	`sad. -0.25 ruf. -1.04 dom. +0.11 bre. +0.04`	HIS	chainID: A, resSeq: 286, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 457.0 Å³ d(Fe-oop): 0.043 Å
4wjy-A-504	`sad. -0.25 ruf. -1.04 dom. +0.11 bre. +0.04`	HIS	chainID: A, resSeq: 393, molecule: Cytochrome c-552
4wjy-A-505	`sad. +0.11 ruf. -0.54 dom. +0.14 bre. +0.01`	HIS	chainID: A, resSeq: 275, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 532.0 Å³ d(Fe-oop): 0.022 Å
4wjy-A-505	`sad. +0.11 ruf. -0.54 dom. +0.14 bre. +0.01`	HIS	chainID: A, resSeq: 318, molecule: Cytochrome c-552
4wjy-B-501	`sad. +0.71 ruf. -0.40 dom. +0.13 bre. -0.05`	LYS	chainID: B, resSeq: 126, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 482.0 Å³ d(Fe-oop): 0.039 Å
4wjy-B-501	`sad. +0.71 ruf. -0.40 dom. +0.13 bre. -0.05`	HOH	chainID: B, resSeq: 788, molecule: water
4wjy-B-502	`sad. +0.52 ruf. -0.69 dom. -0.14 bre. -0.07`	HIS	chainID: B, resSeq: 164, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 359.0 Å³ d(Fe-oop): 0.018 Å
4wjy-B-502	`sad. +0.52 ruf. -0.69 dom. -0.14 bre. -0.07`	HIS	chainID: B, resSeq: 301, molecule: Cytochrome c-552
4wjy-B-503	`sad. -0.33 ruf. -0.63 dom. +0.16 bre. +0.20`	HIS	chainID: B, resSeq: 94, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 451.0 Å³ d(Fe-oop): 0.047 Å
4wjy-B-503	`sad. -0.33 ruf. -0.63 dom. +0.16 bre. +0.20`	HIS	chainID: B, resSeq: 213, molecule: Cytochrome c-552
4wjy-B-504	`sad. -0.16 ruf. -0.96 dom. +0.03 bre. +0.10`	HIS	chainID: B, resSeq: 286, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 451.0 Å³ d(Fe-oop): 0.021 Å
4wjy-B-504	`sad. -0.16 ruf. -0.96 dom. +0.03 bre. +0.10`	HIS	chainID: B, resSeq: 393, molecule: Cytochrome c-552
4wjy-B-505	`sad. +0.18 ruf. -0.48 dom. +0.13 bre. -0.13`	HIS	chainID: B, resSeq: 275, molecule: Cytochrome c-552	oxidoreductase oligomeric count: 2 pocket vol.: 513.0 Å³ d(Fe-oop): 0.005 Å
4wjy-B-505	`sad. +0.18 ruf. -0.48 dom. +0.13 bre. -0.13`	HIS	chainID: B, resSeq: 318, molecule: Cytochrome c-552