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Protein data
function: oxygen carrierexperiment: X-RAY DIFFRACTION
resolution: 3.2 Å
axial ligand #1: HIS
chainID: S,resSeq: 94,
Coordination distance[Å]: 1.861
molecule: Globin d Chain
Organism: Glossoscolex paulistus
axial ligand #2: CYN
chainID: S,resSeq: 202,
Coordination distance[Å]: 2.11
molecule: CYANIDE ION
List of other hemes in pdb:4u8u
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
4u8u-A-201 |
sad. +0.09 ruf. -0.08 dom. +0.01 bre. -0.38 |
HIS | chainID: A, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 535.0 Å3 d(Fe-oop): 0.046 Å |
| CYN | chainID: A, resSeq: 202, molecule: CYANIDE ION |
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4u8u-B-201 |
sad. +0.08 ruf. +0.18 dom. -0.46 bre. -0.32 |
HIS | chainID: B, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 530.0 Å3 d(Fe-oop): 0.040 Å |
| CYN | chainID: B, resSeq: 202, molecule: CYANIDE ION |
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4u8u-C-201 |
sad. -0.04 ruf. +0.20 dom. -0.05 bre. -0.29 |
HIS | chainID: C, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 500.0 Å3 d(Fe-oop): 0.141 Å |
| CYN | chainID: C, resSeq: 202, molecule: CYANIDE ION |
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4u8u-D-201 |
sad. -0.11 ruf. -0.04 dom. -0.26 bre. -0.33 |
HIS | chainID: D, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 550.0 Å3 d(Fe-oop): 0.076 Å |
| CYN | chainID: D, resSeq: 202, molecule: CYANIDE ION |
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4u8u-E-201 |
sad. +0.25 ruf. -0.21 dom. -0.05 bre. -0.36 |
HIS | chainID: E, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 550.0 Å3 d(Fe-oop): 0.073 Å |
| CYN | chainID: E, resSeq: 202, molecule: CYANIDE ION |
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4u8u-F-201 |
sad. +0.22 ruf. +0.13 dom. -0.32 bre. -0.31 |
HIS | chainID: F, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 520.0 Å3 d(Fe-oop): 0.018 Å |
| CYN | chainID: F, resSeq: 202, molecule: CYANIDE ION |
|||
4u8u-G-201 |
sad. -0.23 ruf. +0.05 dom. -0.05 bre. -0.34 |
HIS | chainID: G, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 498.0 Å3 d(Fe-oop): 0.144 Å |
| CYN | chainID: G, resSeq: 202, molecule: CYANIDE ION |
|||
4u8u-H-201 |
sad. -0.06 ruf. +0.03 dom. -0.21 bre. -0.31 |
HIS | chainID: H, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 557.0 Å3 d(Fe-oop): 0.029 Å |
| CYN | chainID: H, resSeq: 202, molecule: CYANIDE ION |
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4u8u-I-201 |
sad. +0.15 ruf. -0.18 dom. -0.02 bre. -0.38 |
HIS | chainID: I, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 514.0 Å3 d(Fe-oop): 0.078 Å |
| CYN | chainID: I, resSeq: 202, molecule: CYANIDE ION |
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4u8u-J-201 |
sad. +0.01 ruf. +0.07 dom. -0.32 bre. -0.36 |
HIS | chainID: J, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 533.0 Å3 d(Fe-oop): 0.039 Å |
| CYN | chainID: J, resSeq: 202, molecule: CYANIDE ION |
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4u8u-K-201 |
sad. -0.14 ruf. +0.32 dom. -0.07 bre. -0.34 |
HIS | chainID: K, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 519.0 Å3 d(Fe-oop): 0.189 Å |
| CYN | chainID: K, resSeq: 202, molecule: CYANIDE ION |
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4u8u-L-201 |
sad. -0.09 ruf. -0.02 dom. -0.16 bre. -0.35 |
HIS | chainID: L, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 544.0 Å3 d(Fe-oop): 0.003 Å |
| CYN | chainID: L, resSeq: 202, molecule: CYANIDE ION |
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4u8u-P-201 |
sad. +0.13 ruf. -0.19 dom. +0.00 bre. -0.41 |
HIS | chainID: P, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 518.0 Å3 d(Fe-oop): 0.067 Å |
| CYN | chainID: P, resSeq: 202, molecule: CYANIDE ION |
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4u8u-Q-201 |
sad. +0.07 ruf. +0.18 dom. -0.37 bre. -0.32 |
HIS | chainID: Q, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 545.0 Å3 d(Fe-oop): 0.019 Å |
| CYN | chainID: Q, resSeq: 202, molecule: CYANIDE ION |
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4u8u-R-201 |
sad. -0.15 ruf. +0.25 dom. +0.04 bre. -0.29 |
HIS | chainID: R, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 504.0 Å3 d(Fe-oop): 0.141 Å |
| CYN | chainID: R, resSeq: 202, molecule: CYANIDE ION |
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4u8u-T-201 |
sad. +0.10 ruf. -0.23 dom. +0.03 bre. -0.39 |
HIS | chainID: T, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 507.0 Å3 d(Fe-oop): 0.123 Å |
| CYN | chainID: T, resSeq: 202, molecule: CYANIDE ION |
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4u8u-U-201 |
sad. +0.15 ruf. -0.02 dom. -0.39 bre. -0.33 |
HIS | chainID: U, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 508.0 Å3 d(Fe-oop): 0.018 Å |
| CYN | chainID: U, resSeq: 202, molecule: CYANIDE ION |
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4u8u-V-201 |
sad. -0.17 ruf. +0.10 dom. -0.05 bre. -0.36 |
HIS | chainID: V, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 493.0 Å3 d(Fe-oop): 0.177 Å |
| CYN | chainID: V, resSeq: 202, molecule: CYANIDE ION |
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4u8u-W-201 |
sad. -0.18 ruf. +0.09 dom. -0.16 bre. -0.36 |
HIS | chainID: W, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 564.0 Å3 d(Fe-oop): 0.025 Å |
| CYN | chainID: W, resSeq: 202, molecule: CYANIDE ION |
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4u8u-X-201 |
sad. +0.07 ruf. +0.04 dom. -0.11 bre. -0.36 |
HIS | chainID: X, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 506.0 Å3 d(Fe-oop): 0.099 Å |
| CYN | chainID: X, resSeq: 202, molecule: CYANIDE ION |
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4u8u-Y-201 |
sad. +0.04 ruf. +0.07 dom. -0.33 bre. -0.36 |
HIS | chainID: Y, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 519.0 Å3 d(Fe-oop): 0.000 Å |
| CYN | chainID: Y, resSeq: 202, molecule: CYANIDE ION |
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4u8u-Z-201 |
sad. -0.10 ruf. +0.25 dom. -0.07 bre. -0.32 |
HIS | chainID: Z, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 502.0 Å3 d(Fe-oop): 0.184 Å |
| CYN | chainID: Z, resSeq: 202, molecule: CYANIDE ION |
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4u8u-a-201 |
sad. -0.10 ruf. -0.04 dom. -0.25 bre. -0.34 |
HIS | chainID: a, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 558.0 Å3 d(Fe-oop): 0.088 Å |
| CYN | chainID: a, resSeq: 202, molecule: CYANIDE ION |
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4u8u-e-201 |
sad. +0.10 ruf. -0.19 dom. -0.14 bre. -0.39 |
HIS | chainID: e, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 484.0 Å3 d(Fe-oop): 0.071 Å |
| CYN | chainID: e, resSeq: 202, molecule: CYANIDE ION |
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4u8u-f-201 |
sad. +0.05 ruf. +0.04 dom. -0.35 bre. -0.34 |
HIS | chainID: f, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 519.0 Å3 d(Fe-oop): 0.009 Å |
| CYN | chainID: f, resSeq: 202, molecule: CYANIDE ION |
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4u8u-g-201 |
sad. -0.13 ruf. +0.16 dom. -0.03 bre. -0.29 |
HIS | chainID: g, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 511.0 Å3 d(Fe-oop): 0.149 Å |
| CYN | chainID: g, resSeq: 202, molecule: CYANIDE ION |
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4u8u-h-201 |
sad. -0.12 ruf. +0.11 dom. -0.22 bre. -0.32 |
HIS | chainID: h, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 560.0 Å3 d(Fe-oop): 0.077 Å |
| CYN | chainID: h, resSeq: 202, molecule: CYANIDE ION |
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4u8u-i-201 |
sad. +0.12 ruf. -0.15 dom. +0.01 bre. -0.37 |
HIS | chainID: i, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 521.0 Å3 d(Fe-oop): 0.020 Å |
| CYN | chainID: i, resSeq: 202, molecule: CYANIDE ION |
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4u8u-j-201 |
sad. +0.05 ruf. +0.20 dom. -0.37 bre. -0.35 |
HIS | chainID: j, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 525.0 Å3 d(Fe-oop): 0.024 Å |
| CYN | chainID: j, resSeq: 202, molecule: CYANIDE ION |
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4u8u-k-201 |
sad. -0.24 ruf. +0.16 dom. -0.12 bre. -0.37 |
HIS | chainID: k, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 505.0 Å3 d(Fe-oop): 0.221 Å |
| CYN | chainID: k, resSeq: 202, molecule: CYANIDE ION |
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4u8u-l-201 |
sad. -0.05 ruf. +0.18 dom. -0.19 bre. -0.33 |
HIS | chainID: l, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 541.0 Å3 d(Fe-oop): 0.019 Å |
| CYN | chainID: l, resSeq: 202, molecule: CYANIDE ION |
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4u8u-m-201 |
sad. +0.05 ruf. +0.03 dom. -0.13 bre. -0.41 |
HIS | chainID: m, resSeq: 99, molecule: Globin a chain |
oxygen carrier oligomeric count: 180 pocket vol.: 539.0 Å3 d(Fe-oop): 0.003 Å |
| CYN | chainID: m, resSeq: 202, molecule: CYANIDE ION |
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4u8u-n-201 |
sad. +0.00 ruf. +0.05 dom. -0.37 bre. -0.35 |
HIS | chainID: n, resSeq: 95, molecule: Globin b Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 537.0 Å3 d(Fe-oop): 0.015 Å |
| CYN | chainID: n, resSeq: 202, molecule: CYANIDE ION |
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4u8u-o-201 |
sad. +0.05 ruf. +0.32 dom. -0.06 bre. -0.35 |
HIS | chainID: o, resSeq: 100, molecule: Globin c Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 495.0 Å3 d(Fe-oop): 0.094 Å |
| CYN | chainID: o, resSeq: 202, molecule: CYANIDE ION |
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4u8u-p-201 |
sad. -0.13 ruf. +0.06 dom. -0.21 bre. -0.37 |
HIS | chainID: p, resSeq: 94, molecule: Globin d Chain |
oxygen carrier oligomeric count: 180 pocket vol.: 531.0 Å3 d(Fe-oop): 0.029 Å |
| CYN | chainID: p, resSeq: 202, molecule: CYANIDE ION |
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