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Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 2.1 Å
axial ligand #1: HIS
chainID: D,resSeq: 479,
Coordination distance[Å]: 2.127
molecule: MccA
Organism: Wolinella succinogenes DSM 1740
axial ligand #2: HIS
chainID: D,resSeq: 579,
Coordination distance[Å]: 2.008
molecule: same as ligand #1
List of other hemes in pdb:4rkn
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
4rkn-A-902 |
sad. -0.00 ruf. -0.36 dom. -0.06 bre. -0.11 |
HIS | chainID: A, resSeq: 147, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 414.0 Å3 d(Fe-oop): 0.012 Å |
| HIS | chainID: A, resSeq: 348, molecule: MccA |
|||
4rkn-A-903 |
sad. -0.16 ruf. -0.49 dom. -0.33 bre. +0.08 |
HIS | chainID: A, resSeq: 306, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 375.0 Å3 d(Fe-oop): 0.023 Å |
| SO3 | chainID: A, resSeq: 912, molecule: SULFITE ION |
|||
4rkn-A-904 |
sad. -0.02 ruf. -0.69 dom. -0.01 bre. +0.06 |
HIS | chainID: A, resSeq: 343, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 489.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: A, resSeq: 425, molecule: MccA |
|||
4rkn-A-905 |
sad. -0.41 ruf. -0.51 dom. -0.09 bre. -0.11 |
HIS | chainID: A, resSeq: 159, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 408.0 Å3 d(Fe-oop): 0.020 Å |
| HIS | chainID: A, resSeq: 364, molecule: MccA |
|||
4rkn-A-906 |
sad. +0.04 ruf. -0.46 dom. -0.07 bre. -0.09 |
HIS | chainID: A, resSeq: 422, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 432.0 Å3 d(Fe-oop): 0.004 Å |
| HIS | chainID: A, resSeq: 516, molecule: MccA |
|||
4rkn-A-907 |
sad. -0.05 ruf. -0.68 dom. -0.02 bre. -0.03 |
HIS | chainID: A, resSeq: 411, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 530.0 Å3 d(Fe-oop): 0.003 Å |
| HIS | chainID: A, resSeq: 466, molecule: MccA |
|||
4rkn-A-908 |
sad. +0.18 ruf. -0.59 dom. +0.01 bre. +0.03 |
HIS | chainID: A, resSeq: 488, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 478.0 Å3 d(Fe-oop): 0.006 Å |
| HIS | chainID: A, resSeq: 663, molecule: MccA |
|||
4rkn-A-909 |
sad. +0.24 ruf. -0.76 dom. -0.13 bre. +0.01 |
HIS | chainID: A, resSeq: 479, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 490.0 Å3 d(Fe-oop): 0.004 Å |
| HIS | chainID: A, resSeq: 579, molecule: MccA |
|||
4rkn-B-902 |
sad. -0.06 ruf. -0.50 dom. -0.03 bre. -0.02 |
HIS | chainID: B, resSeq: 147, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 404.0 Å3 d(Fe-oop): 0.007 Å |
| HIS | chainID: B, resSeq: 348, molecule: MccA |
|||
4rkn-B-903 |
sad. -0.19 ruf. -0.51 dom. -0.37 bre. -0.01 |
HIS | chainID: B, resSeq: 306, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 365.0 Å3 d(Fe-oop): 0.022 Å |
| SO3 | chainID: B, resSeq: 911, molecule: SULFITE ION |
|||
4rkn-B-904 |
sad. -0.05 ruf. -0.80 dom. -0.02 bre. +0.11 |
HIS | chainID: B, resSeq: 343, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 461.0 Å3 d(Fe-oop): 0.016 Å |
| HIS | chainID: B, resSeq: 425, molecule: MccA |
|||
4rkn-B-905 |
sad. -0.36 ruf. -0.45 dom. -0.05 bre. -0.14 |
HIS | chainID: B, resSeq: 159, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 422.0 Å3 d(Fe-oop): 0.017 Å |
| HIS | chainID: B, resSeq: 364, molecule: MccA |
|||
4rkn-B-906 |
sad. -0.06 ruf. -0.35 dom. -0.00 bre. -0.05 |
HIS | chainID: B, resSeq: 422, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 433.0 Å3 d(Fe-oop): 0.006 Å |
| HIS | chainID: B, resSeq: 516, molecule: MccA |
|||
4rkn-B-907 |
sad. -0.02 ruf. -0.74 dom. -0.01 bre. +0.05 |
HIS | chainID: B, resSeq: 411, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 516.0 Å3 d(Fe-oop): 0.002 Å |
| HIS | chainID: B, resSeq: 466, molecule: MccA |
|||
4rkn-B-908 |
sad. +0.19 ruf. -0.59 dom. +0.04 bre. -0.01 |
HIS | chainID: B, resSeq: 488, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 506.0 Å3 d(Fe-oop): 0.002 Å |
| HIS | chainID: B, resSeq: 663, molecule: MccA |
|||
4rkn-B-909 |
sad. +0.20 ruf. -0.63 dom. -0.12 bre. +0.07 |
HIS | chainID: B, resSeq: 479, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 496.0 Å3 d(Fe-oop): 0.015 Å |
| HIS | chainID: B, resSeq: 579, molecule: MccA |
|||
4rkn-C-902 |
sad. -0.02 ruf. -0.42 dom. -0.01 bre. -0.04 |
HIS | chainID: C, resSeq: 147, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 408.0 Å3 d(Fe-oop): 0.002 Å |
| HIS | chainID: C, resSeq: 348, molecule: MccA |
|||
4rkn-C-903 |
sad. -0.14 ruf. -0.49 dom. -0.36 bre. -0.04 |
HIS | chainID: C, resSeq: 306, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 367.0 Å3 d(Fe-oop): 0.023 Å |
| SO3 | chainID: C, resSeq: 911, molecule: SULFITE ION |
|||
4rkn-C-904 |
sad. -0.19 ruf. -0.87 dom. +0.12 bre. +0.02 |
HIS | chainID: C, resSeq: 343, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 466.0 Å3 d(Fe-oop): 0.013 Å |
| HIS | chainID: C, resSeq: 425, molecule: MccA |
|||
4rkn-C-905 |
sad. -0.24 ruf. -0.60 dom. -0.04 bre. -0.16 |
HIS | chainID: C, resSeq: 159, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 415.0 Å3 d(Fe-oop): 0.010 Å |
| HIS | chainID: C, resSeq: 364, molecule: MccA |
|||
4rkn-C-906 |
sad. -0.05 ruf. -0.38 dom. -0.06 bre. -0.12 |
HIS | chainID: C, resSeq: 422, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 416.0 Å3 d(Fe-oop): 0.011 Å |
| HIS | chainID: C, resSeq: 516, molecule: MccA |
|||
4rkn-C-907 |
sad. -0.03 ruf. -0.74 dom. -0.06 bre. -0.05 |
HIS | chainID: C, resSeq: 411, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 524.0 Å3 d(Fe-oop): 0.005 Å |
| HIS | chainID: C, resSeq: 466, molecule: MccA |
|||
4rkn-C-908 |
sad. +0.25 ruf. -0.58 dom. -0.01 bre. -0.03 |
HIS | chainID: C, resSeq: 488, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 504.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: C, resSeq: 663, molecule: MccA |
|||
4rkn-C-909 |
sad. +0.26 ruf. -0.64 dom. -0.08 bre. +0.12 |
HIS | chainID: C, resSeq: 479, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 491.0 Å3 d(Fe-oop): 0.000 Å |
| HIS | chainID: C, resSeq: 579, molecule: MccA |
|||
4rkn-D-902 |
sad. +0.01 ruf. -0.49 dom. -0.08 bre. -0.05 |
HIS | chainID: D, resSeq: 147, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 603.0 Å3 d(Fe-oop): 0.005 Å |
| HIS | chainID: D, resSeq: 348, molecule: MccA |
|||
4rkn-D-903 |
sad. -0.16 ruf. -0.46 dom. -0.43 bre. +0.05 |
HIS | chainID: D, resSeq: 306, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 374.0 Å3 d(Fe-oop): 0.026 Å |
| SO3 | chainID: D, resSeq: 912, molecule: SULFITE ION |
|||
4rkn-D-904 |
sad. -0.06 ruf. -0.66 dom. -0.04 bre. +0.02 |
HIS | chainID: D, resSeq: 343, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 539.0 Å3 d(Fe-oop): 0.002 Å |
| HIS | chainID: D, resSeq: 425, molecule: MccA |
|||
4rkn-D-905 |
sad. -0.35 ruf. -0.42 dom. -0.02 bre. -0.01 |
HIS | chainID: D, resSeq: 159, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 425.0 Å3 d(Fe-oop): 0.010 Å |
| HIS | chainID: D, resSeq: 364, molecule: MccA |
|||
4rkn-D-906 |
sad. -0.08 ruf. -0.37 dom. -0.09 bre. -0.03 |
HIS | chainID: D, resSeq: 422, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 407.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: D, resSeq: 516, molecule: MccA |
|||
4rkn-D-907 |
sad. +0.04 ruf. -0.67 dom. -0.05 bre. -0.06 |
HIS | chainID: D, resSeq: 411, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 574.0 Å3 d(Fe-oop): 0.018 Å |
| HIS | chainID: D, resSeq: 466, molecule: MccA |
|||
4rkn-D-908 |
sad. +0.22 ruf. -0.62 dom. -0.05 bre. +0.01 |
HIS | chainID: D, resSeq: 488, molecule: MccA |
oxidoreductase oligomeric count: 3 pocket vol.: 488.0 Å3 d(Fe-oop): 0.001 Å |
| HIS | chainID: D, resSeq: 663, molecule: MccA |
|||