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PyDISH No: 09513

PDB: 4q5c,
chainID: B, resSeq: 605
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.62 Å

axial ligand #1: HIS

chainID: B,
resSeq: 372,
Coordination distance[Å]: 1.948
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 415,
Coordination distance[Å]: 1.94
molecule: same as ligand #1

List of other hemes in pdb:4q5c

ID of heme	Distortion	Axial ligands on heme		Function & structure
4q5c-A-601	`sad. +0.55 ruf. -0.66 dom. +0.01 bre. -0.30`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 430.0 Å³ d(Fe-oop): 0.008 Å
4q5c-A-601	`sad. +0.55 ruf. -0.66 dom. +0.01 bre. -0.30`	SO3	chainID: A, resSeq: 609, molecule: SULFITE ION
4q5c-A-602	`sad. +1.06 ruf. -0.48 dom. -0.16 bre. -0.25`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 486.0 Å³ d(Fe-oop): 0.006 Å
4q5c-A-602	`sad. +1.06 ruf. -0.48 dom. -0.16 bre. -0.25`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
4q5c-A-603	`sad. -0.20 ruf. -0.87 dom. +0.11 bre. -0.28`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 429.0 Å³ d(Fe-oop): 0.008 Å
4q5c-A-603	`sad. -0.20 ruf. -0.87 dom. +0.11 bre. -0.28`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
4q5c-A-604	`sad. +0.69 ruf. -0.86 dom. -0.19 bre. -0.23`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 431.0 Å³ d(Fe-oop): 0.017 Å
4q5c-A-604	`sad. +0.69 ruf. -0.86 dom. -0.19 bre. -0.23`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
4q5c-A-605	`sad. -0.27 ruf. -1.14 dom. +0.03 bre. -0.32`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 538.0 Å³ d(Fe-oop): 0.001 Å
4q5c-A-605	`sad. -0.27 ruf. -1.14 dom. +0.03 bre. -0.32`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
4q5c-A-606	`sad. -0.12 ruf. -0.57 dom. -0.10 bre. -0.35`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 364.0 Å³ d(Fe-oop): 0.013 Å
4q5c-A-606	`sad. -0.12 ruf. -0.57 dom. -0.10 bre. -0.35`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
4q5c-A-607	`sad. +0.36 ruf. -0.73 dom. -0.09 bre. -0.31`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 497.0 Å³ d(Fe-oop): 0.009 Å
4q5c-A-607	`sad. +0.36 ruf. -0.73 dom. -0.09 bre. -0.31`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
4q5c-A-608	`sad. +0.06 ruf. -0.53 dom. -0.15 bre. -0.39`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 426.0 Å³ d(Fe-oop): 0.015 Å
4q5c-A-608	`sad. +0.06 ruf. -0.53 dom. -0.15 bre. -0.39`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
4q5c-B-601	`sad. +0.54 ruf. -0.59 dom. -0.01 bre. -0.28`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 408.0 Å³ d(Fe-oop): 0.007 Å
4q5c-B-601	`sad. +0.54 ruf. -0.59 dom. -0.01 bre. -0.28`	SO3	chainID: B, resSeq: 610, molecule: SULFITE ION
4q5c-B-602	`sad. +1.11 ruf. -0.45 dom. -0.12 bre. -0.21`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 491.0 Å³ d(Fe-oop): 0.023 Å
4q5c-B-602	`sad. +1.11 ruf. -0.45 dom. -0.12 bre. -0.21`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
4q5c-B-603	`sad. -0.27 ruf. -0.86 dom. +0.13 bre. -0.25`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 419.0 Å³ d(Fe-oop): 0.012 Å
4q5c-B-603	`sad. -0.27 ruf. -0.86 dom. +0.13 bre. -0.25`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
4q5c-B-604	`sad. +0.72 ruf. -0.85 dom. -0.20 bre. -0.20`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 425.0 Å³ d(Fe-oop): 0.017 Å
4q5c-B-604	`sad. +0.72 ruf. -0.85 dom. -0.20 bre. -0.20`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
4q5c-B-606	`sad. -0.10 ruf. -0.58 dom. -0.09 bre. -0.36`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 383.0 Å³ d(Fe-oop): 0.014 Å
4q5c-B-606	`sad. -0.10 ruf. -0.58 dom. -0.09 bre. -0.36`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
4q5c-B-607	`sad. +0.34 ruf. -0.69 dom. -0.10 bre. -0.29`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 508.0 Å³ d(Fe-oop): 0.010 Å
4q5c-B-607	`sad. +0.34 ruf. -0.69 dom. -0.10 bre. -0.29`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
4q5c-B-608	`sad. -0.04 ruf. -0.61 dom. -0.16 bre. -0.40`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 431.0 Å³ d(Fe-oop): 0.010 Å
4q5c-B-608	`sad. -0.04 ruf. -0.61 dom. -0.16 bre. -0.40`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase