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PyDISH No: 09497

PDB: 4q5b,
chainID: B, resSeq: 605
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: HIS

chainID: B,
resSeq: 372,
Coordination distance[Å]: 1.939
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 415,
Coordination distance[Å]: 1.932
molecule: same as ligand #1

List of other hemes in pdb:4q5b

ID of heme	Distortion	Axial ligands on heme		Function & structure
4q5b-A-601	`sad. +0.56 ruf. -0.69 dom. -0.01 bre. -0.36`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 441.0 Å³ d(Fe-oop): 0.006 Å
4q5b-A-601	`sad. +0.56 ruf. -0.69 dom. -0.01 bre. -0.36`	SO3	chainID: A, resSeq: 609, molecule: SULFITE ION
4q5b-A-602	`sad. +0.97 ruf. -0.49 dom. -0.16 bre. -0.23`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 507.0 Å³ d(Fe-oop): 0.009 Å
4q5b-A-602	`sad. +0.97 ruf. -0.49 dom. -0.16 bre. -0.23`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
4q5b-A-603	`sad. -0.22 ruf. -0.86 dom. +0.13 bre. -0.29`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 418.0 Å³ d(Fe-oop): 0.007 Å
4q5b-A-603	`sad. -0.22 ruf. -0.86 dom. +0.13 bre. -0.29`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
4q5b-A-604	`sad. +0.68 ruf. -0.90 dom. -0.19 bre. -0.29`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 431.0 Å³ d(Fe-oop): 0.010 Å
4q5b-A-604	`sad. +0.68 ruf. -0.90 dom. -0.19 bre. -0.29`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
4q5b-A-605	`sad. -0.33 ruf. -1.17 dom. +0.04 bre. -0.36`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 561.0 Å³ d(Fe-oop): 0.004 Å
4q5b-A-605	`sad. -0.33 ruf. -1.17 dom. +0.04 bre. -0.36`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
4q5b-A-606	`sad. -0.12 ruf. -0.51 dom. -0.11 bre. -0.40`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 357.0 Å³ d(Fe-oop): 0.013 Å
4q5b-A-606	`sad. -0.12 ruf. -0.51 dom. -0.11 bre. -0.40`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
4q5b-A-607	`sad. +0.35 ruf. -0.76 dom. -0.09 bre. -0.31`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 510.0 Å³ d(Fe-oop): 0.006 Å
4q5b-A-607	`sad. +0.35 ruf. -0.76 dom. -0.09 bre. -0.31`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
4q5b-A-608	`sad. +0.04 ruf. -0.60 dom. -0.12 bre. -0.43`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 427.0 Å³ d(Fe-oop): 0.014 Å
4q5b-A-608	`sad. +0.04 ruf. -0.60 dom. -0.12 bre. -0.43`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
4q5b-B-601	`sad. +0.58 ruf. -0.68 dom. -0.02 bre. -0.33`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 419.0 Å³ d(Fe-oop): 0.005 Å
4q5b-B-601	`sad. +0.58 ruf. -0.68 dom. -0.02 bre. -0.33`	SO3	chainID: B, resSeq: 609, molecule: SULFITE ION
4q5b-B-602	`sad. +1.05 ruf. -0.49 dom. -0.13 bre. -0.22`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 507.0 Å³ d(Fe-oop): 0.009 Å
4q5b-B-602	`sad. +1.05 ruf. -0.49 dom. -0.13 bre. -0.22`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
4q5b-B-603	`sad. -0.26 ruf. -0.86 dom. +0.14 bre. -0.26`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 426.0 Å³ d(Fe-oop): 0.009 Å
4q5b-B-603	`sad. -0.26 ruf. -0.86 dom. +0.14 bre. -0.26`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
4q5b-B-604	`sad. +0.68 ruf. -0.87 dom. -0.19 bre. -0.25`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 425.0 Å³ d(Fe-oop): 0.019 Å
4q5b-B-604	`sad. +0.68 ruf. -0.87 dom. -0.19 bre. -0.25`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
4q5b-B-606	`sad. -0.14 ruf. -0.63 dom. -0.10 bre. -0.43`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 376.0 Å³ d(Fe-oop): 0.013 Å
4q5b-B-606	`sad. -0.14 ruf. -0.63 dom. -0.10 bre. -0.43`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
4q5b-B-607	`sad. +0.36 ruf. -0.74 dom. -0.09 bre. -0.32`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 514.0 Å³ d(Fe-oop): 0.002 Å
4q5b-B-607	`sad. +0.36 ruf. -0.74 dom. -0.09 bre. -0.32`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
4q5b-B-608	`sad. -0.01 ruf. -0.63 dom. -0.11 bre. -0.44`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 433.0 Å³ d(Fe-oop): 0.004 Å
4q5b-B-608	`sad. -0.01 ruf. -0.63 dom. -0.11 bre. -0.44`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase